RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 MAPK1P28482 360 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 ERFP50548 548 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 CACNB2Q08289 660 aaPredicted RBP19.92■□□□□ 0.78
UPF1-201ENST00000262803 PLEKHH3Q7Z736 793 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 ERP27Q96DN0 273 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 AGPAT3Q9NRZ7 376 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 FUT8Q9BYC5 575 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 MTO1Q9Y2Z2 717 aaKnown RBP19.92■□□□□ 0.78
UPF1-201ENST00000262803 SALL3Q9BXA9 1300 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.91■□□□□ 0.78
UPF1-201ENST00000262803 A0A1B0GW55 424 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 DUX4L2P0CJ85 424 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 DUX4L3P0CJ86 424 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 DUX4L4P0CJ87 422 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 DUX4L5P0CJ88 424 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 DUX4L6P0CJ89 424 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 DUX4L7P0CJ90 424 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 ZNF177Q13360 481 aaPredicted RBP19.91■□□□□ 0.78
UPF1-201ENST00000262803 GNASQ5JWF2 1037 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 SPDYAQ5MJ70 313 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 FEZF2Q8TBJ5 459 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 PLEKHA8Q96JA3 519 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 SLC24A3Q9HC58 644 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 KCNH7Q9NS40 1196 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.91■□□□□ 0.78
UPF1-201ENST00000262803 DUX4Q9UBX2 424 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 DUSP10Q9Y6W6 482 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 MAP3K13O43283 966 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 RNASEH1O60930 286 aaKnown RBP19.91■□□□□ 0.78
UPF1-201ENST00000262803 PLD1Q13393 1074 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 PHKG1Q16816 387 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 CYP4A22Q5TCH4 519 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 SEPT8Q92599 483 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 PI4K2AQ9BTU6 479 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 RASSF10A6NK89 507 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 RAP1GDS1P52306 607 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 SKOR1P84550 965 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 CAPRIN2Q6IMN6 1127 aaKnown RBP19.91■□□□□ 0.78
UPF1-201ENST00000262803 TTI2Q6NXR4 508 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 H2AFY2Q9P0M6 372 aaPredicted RBP19.91■□□□□ 0.78
UPF1-201ENST00000262803 TBC1D4O60343 1298 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 HSD17B3P37058 310 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 COILP38432 576 aaPredicted RBP19.91■□□□□ 0.78
UPF1-201ENST00000262803 MDH1BQ5I0G3 518 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 ZFP42Q96MM3 310 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 THAP2Q9H0W7 228 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 DEFB129Q9H1M3 183 aa19.91■□□□□ 0.78
UPF1-201ENST00000262803 MARCOQ9UEW3 520 aaPredicted RBP19.91■□□□□ 0.78
UPF1-201ENST00000262803 KLRK1P26718 216 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 NAMPTP43490 491 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 PTGISQ16647 500 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 C10orf120Q5SQS8 335 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 WDR93Q6P2C0 686 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 PPIL6Q8IXY8 311 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 AAR2Q9Y312 384 aaKnown RBP19.9■□□□□ 0.78
UPF1-201ENST00000262803 ZBTB12Q9Y330 459 aaPredicted RBP19.9■□□□□ 0.78
UPF1-201ENST00000262803 MSH4O15457 936 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 NPTXRO95502 500 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 PLA2G4AP47712 749 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 NEK2P51955 445 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 PDK2Q15119 407 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 ERO1BQ86YB8 467 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 DTX3LQ8TDB6 740 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 MRPS31Q92665 395 aaKnown RBP19.9■□□□□ 0.78
UPF1-201ENST00000262803 TASP1Q9H6P5 420 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 C20orf96Q9NUD7 363 aaPredicted RBP19.9■□□□□ 0.78
UPF1-201ENST00000262803 KBTBD4Q9NVX7 518 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 SLC25A13Q9UJS0 675 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 GTF3C4Q9UKN8 822 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 CAPN6Q9Y6Q1 641 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 C2orf81A6NN90 581 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 EVPLLA8MZ36 301 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 SUPT3HB4E1H0 165 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 RGL2O15211 777 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 CST8O60676 142 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 PREPLQ4J6C6 727 aaPredicted RBP19.9■□□□□ 0.78
UPF1-201ENST00000262803 C3orf62Q6ZUJ4 267 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 CRLS1Q9UJA2 301 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 FRMPD1Q5SYB0 1578 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 SPATA31A5Q5VU36 1347 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 SPATA31A7Q8IWB4 1347 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 AP5Z1O43299 807 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 H2AFXP16104 143 aaPredicted RBP19.9■□□□□ 0.78
UPF1-201ENST00000262803 PTK7Q13308 1070 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 MRNIPQ6NTE8 343 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 SPATA18Q8TC71 538 aa19.9■□□□□ 0.78
UPF1-201ENST00000262803 CELF2O95319 508 aaKnown RBP19.89■□□□□ 0.78
UPF1-201ENST00000262803 RBP3P10745 1247 aa19.89■□□□□ 0.78
UPF1-201ENST00000262803 OXCT1P55809 520 aa19.89■□□□□ 0.78
UPF1-201ENST00000262803 LONP2Q86WA8 852 aa19.89■□□□□ 0.78
UPF1-201ENST00000262803 ADARB2Q9NS39 739 aaKnown RBP19.89■□□□□ 0.78
UPF1-201ENST00000262803 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.89■□□□□ 0.78
UPF1-201ENST00000262803 OGTO15294 1046 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 RAB27AP51159 221 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 TWF1Q12792 350 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 CDH18Q13634 790 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 ITGA9Q13797 1035 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 GPAT2Q6NUI2 795 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 TRIM65Q6PJ69 517 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 SLC13A5Q86YT5 568 aaPredicted RBP19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms