RNA–Protein interactions for RNA: ENST00000261646.9

SREBF1-201, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SREBF1, Length 4,178 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-201ENST00000261646 FBXO28Q9NVF7 368 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 FAM237BA0A1B0GVD1 139 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 DDX3YO15523 660 aaKnown RBP16.9■□□□□ 0.3
SREBF1-201ENST00000261646 KDM1AO60341 852 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 SMNDC1O75940 238 aaKnown RBP eCLIP16.9■□□□□ 0.33e-8■■■□□ 15.9
SREBF1-201ENST00000261646 PDGFRAP16234 1089 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 MCOLN2Q8IZK6 566 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 EZH1Q92800 747 aaPredicted RBP16.9■□□□□ 0.3
SREBF1-201ENST00000261646 MED10Q9BTT4 135 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 KRT82Q9NSB4 513 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 HERC5Q9UII4 1024 aaKnown RBP16.9■□□□□ 0.3
SREBF1-201ENST00000261646 SHOC2Q9UQ13 582 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 NUB1Q9Y5A7 615 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 NCANO14594 1321 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 SPATA31A5Q5VU36 1347 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 SPATA31A7Q8IWB4 1347 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 GRAP2O75791 330 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 WFS1O76024 890 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 PSEN1P49768 467 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 SLC10A5Q5PT55 438 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 MFSD7Q6UXD7 560 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 KRT27Q7Z3Y8 459 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 PODNQ7Z5L7 613 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 ZCCHC9Q8N567 271 aaKnown RBP16.9■□□□□ 0.3
SREBF1-201ENST00000261646 CNKSR1Q969H4 720 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 RPF1Q9H9Y2 349 aaKnown RBP16.9■□□□□ 0.3
SREBF1-201ENST00000261646 ARHGEF3Q9NR81 526 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 PAK5Q9P286 719 aa16.9■□□□□ 0.3
SREBF1-201ENST00000261646 FAM208AQ9UK61 1670 aaKnown RBP16.9■□□□□ 0.3
SREBF1-201ENST00000261646 TISP43B9A030 160 aa16.89■□□□□ 0.3
SREBF1-201ENST00000261646 KPNA2P52292 529 aaKnown RBP16.89■□□□□ 0.3
SREBF1-201ENST00000261646 SURF1Q15526 300 aa16.89■□□□□ 0.3
SREBF1-201ENST00000261646 CLEC16AQ2KHT3 1053 aa16.89■□□□□ 0.3
SREBF1-201ENST00000261646 SLC26A11Q86WA9 606 aa16.89■□□□□ 0.3
SREBF1-201ENST00000261646 CDHR1Q96JP9 859 aa16.89■□□□□ 0.3
SREBF1-201ENST00000261646 DDX4Q9NQI0 724 aaKnown RBP16.89■□□□□ 0.3
SREBF1-201ENST00000261646 TSC22D4Q9Y3Q8 395 aa16.89■□□□□ 0.3
SREBF1-201ENST00000261646 CALCAP01258 141 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 ETS1P14921 441 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 YY1P25490 414 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 WDR72Q3MJ13 1102 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 C16orf89Q6UX73 402 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 DDI1Q8WTU0 396 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 ZNF570Q96NI8 536 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 AGAP3Q96P47 875 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 SLC5A4Q9NY91 659 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 BTBD7Q9P203 1132 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 NYAP2Q9P242 653 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 APOL1O14791 398 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 ATP9BO43861 1147 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 CCND2P30279 289 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 SERPINB5P36952 375 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 ELK3P41970 407 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 PPP3CAQ08209 521 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 TTC27Q6P3X3 843 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 SPOCD1Q6ZMY3 1216 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 MARK2Q7KZI7 788 aaKnown RBP16.89■□□□□ 0.29
SREBF1-201ENST00000261646 TRABD2AQ86V40 505 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 CDKL3Q8IVW4 592 aaPredicted RBP16.89■□□□□ 0.29
SREBF1-201ENST00000261646 STK32BQ9NY57 414 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 PCDHA10Q9Y5I2 948 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 SPDYE5A6NIY4 337 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 SMAPO00193 183 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 C2CD2LO14523 706 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 NKRFO15226 690 aaKnown RBP eCLIP16.89■□□□□ 0.291e-6■□□□□ 11
SREBF1-201ENST00000261646 GJB6O95452 261 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 RPL10AP62906 217 aaKnown RBP16.89■□□□□ 0.29
SREBF1-201ENST00000261646 DUOXA2Q1HG44 320 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 FASTKD1Q53R41 847 aaKnown RBP16.89■□□□□ 0.29
SREBF1-201ENST00000261646 ZCCHC23Q6ZST2 131 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 MASTLQ96GX5 879 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 SRPK1Q96SB4 655 aaKnown RBP16.89■□□□□ 0.29
SREBF1-201ENST00000261646 PRPF18Q99633 342 aaKnown RBP16.89■□□□□ 0.29
SREBF1-201ENST00000261646 GCOM2Q9BZD3 368 aaPredicted RBP16.89■□□□□ 0.29
SREBF1-201ENST00000261646 C10orf88Q9H8K7 445 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 BAG5Q9UL15 447 aa16.89■□□□□ 0.29
SREBF1-201ENST00000261646 ASTN1O14525 1302 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 IGSF9BQ9UPX0 1349 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 A0A1W2PPM1 405 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 CCDC78A2IDD5 438 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 PSMC3P17980 439 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 SFNP31947 248 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 VCPP55072 806 aaKnown RBP16.88■□□□□ 0.29
SREBF1-201ENST00000261646 ADARP55265 1226 aaKnown RBP16.88■□□□□ 0.29
SREBF1-201ENST00000261646 HDAC4P56524 1084 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 DLG4P78352 724 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 FAAP100Q0VG06 881 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 KHDC1Q4VXA5 237 aaKnown RBP16.88■□□□□ 0.29
SREBF1-201ENST00000261646 MOXD1Q6UVY6 613 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 LAYNQ6UX15 382 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 CLNKQ7Z7G1 428 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 PALB2Q86YC2 1186 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 RNF135Q8IUD6 432 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 CCNJLQ8IV13 435 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 FER1L4A9Z1Z3 1794 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 E9PBE3 544 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 FAM86B1E9PN63 330 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 EML1O00423 815 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 ABLIM1O14639 778 aa16.88■□□□□ 0.29
SREBF1-201ENST00000261646 TPST1O60507 370 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms