RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 GPR63Q9BZJ6 419 aa19.75■□□□□ 0.75
PTPRE-201ENST00000254667 PKP3Q9Y446 797 aa19.75■□□□□ 0.75
PTPRE-201ENST00000254667 MCL1Q07820 350 aa19.75■□□□□ 0.75
PTPRE-201ENST00000254667 CINPQ9BW66 212 aaPredicted RBP19.75■□□□□ 0.75
PTPRE-201ENST00000254667 HNRNPCL2B2RXH8 293 aa19.75■□□□□ 0.75
PTPRE-201ENST00000254667 CYB561D2O14569 222 aa19.75■□□□□ 0.75
PTPRE-201ENST00000254667 STRNO43815 780 aa19.75■□□□□ 0.75
PTPRE-201ENST00000254667 APOA4P06727 396 aa19.75■□□□□ 0.75
PTPRE-201ENST00000254667 ALDH18A1P54886 795 aaKnown RBP19.75■□□□□ 0.75
PTPRE-201ENST00000254667 GEMIN4P57678 1058 aaKnown RBP19.75■□□□□ 0.75
PTPRE-201ENST00000254667 TMEM259Q4ZIN3 620 aa19.75■□□□□ 0.75
PTPRE-201ENST00000254667 SLC25A41Q8N5S1 370 aa19.75■□□□□ 0.75
PTPRE-201ENST00000254667 MTO1Q9Y2Z2 717 aaKnown RBP19.75■□□□□ 0.75
PTPRE-201ENST00000254667 EIF3HO15372 352 aaKnown RBP eCLIP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 CARSP49589 748 aaKnown RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 RPL10AP62906 217 aaKnown RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 MAPK7Q13164 816 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 NYAP1Q6ZVC0 841 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 RRM2BQ7LG56 351 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 ADGRF2Q8IZF7 708 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 NAF1Q96HR8 494 aaKnown RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 RUBCNLQ9H714 662 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 COG4Q9H9E3 785 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 ACO1P21399 889 aaKnown RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 KCNJ1P48048 391 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 ZNF177Q13360 481 aaPredicted RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 GLRA4Q5JXX5 417 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 ZNF669Q96BR6 464 aaPredicted RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 MRPL1Q9BYD6 325 aaKnown RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 CDY2AQ9Y6F7 541 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 CDY1Q9Y6F8 540 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 CASP4P49662 377 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 ERVK-24P63145 666 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 TIGD7Q6NT04 549 aaPredicted RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 HNRNPLLQ8WVV9 542 aaKnown RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 OPTNQ96CV9 577 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 SERPINB12Q96P63 405 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 CELF4Q9BZC1 486 aaKnown RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 COBLL1Q53SF7 1204 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 PARP9Q8IXQ6 854 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 AGGF1Q8N302 714 aaeCLIP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 ZNF473Q8WTR7 871 aaKnown RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 SMARCAL1Q9NZC9 954 aa19.74■□□□□ 0.75
PTPRE-201ENST00000254667 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 WARS2Q9UGM6 360 aaKnown RBP19.74■□□□□ 0.75
PTPRE-201ENST00000254667 KDM1AO60341 852 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 HERVK_113P62684 666 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 FOXD4Q12950 439 aaPredicted RBP19.73■□□□□ 0.75
PTPRE-201ENST00000254667 TMEM132BQ14DG7 1078 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 CDKAL1Q5VV42 579 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 SDE2Q6IQ49 451 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 PCYOX1LQ8NBM8 494 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 CCT8L2Q96SF2 557 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 AAR2Q9Y312 384 aaKnown RBP19.73■□□□□ 0.75
PTPRE-201ENST00000254667 POLE2P56282 527 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 KIZQ2M2Z5 673 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 SEZ6Q53EL9 994 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 RABGAP1LQ5R372 815 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 SETD3Q86TU7 594 aaPredicted RBP19.73■□□□□ 0.75
PTPRE-201ENST00000254667 ACOT1Q86TX2 421 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 SPIRE2Q8WWL2 714 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 KCNK16Q96T55 309 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 CD274Q9NZQ7 290 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 ITGA11Q9UKX5 1188 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 MEFVO15553 781 aaPredicted RBP19.73■□□□□ 0.75
PTPRE-201ENST00000254667 TFRCP02786 760 aaKnown RBP19.73■□□□□ 0.75
PTPRE-201ENST00000254667 THP07101 528 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 TFDP3Q5H9I0 405 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 KCNQ5Q9NR82 932 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 PFDN1O60925 122 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 HOXA10P31260 410 aaPredicted RBP19.73■□□□□ 0.75
PTPRE-201ENST00000254667 CDH18Q13634 790 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 KRT72Q14CN4 511 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 UGT3A1Q6NUS8 523 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 SH2D3CQ8N5H7 860 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 SEPT8Q92599 483 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 FAM118BQ9BPY3 351 aa19.73■□□□□ 0.75
PTPRE-201ENST00000254667 LRRIQ3A6PVS8 624 aaPredicted RBP19.72■□□□□ 0.75
PTPRE-201ENST00000254667 VWA5AO00534 786 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 C16orf89Q6UX73 402 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 REXO1L1PQ8IX06 675 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 CMTM5Q96DZ9 223 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 IL17RBQ9NRM6 502 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 RIC8BQ9NVN3 520 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 CDYLQ9Y232 598 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 F8VZ95 297 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 PLEKP08567 350 aaPredicted RBP19.72■□□□□ 0.75
PTPRE-201ENST00000254667 OCA2Q04671 838 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 AP1ARQ63HQ0 302 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 NAT9Q9BTE0 207 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 NPHS2Q9NP85 383 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 TMEM120BA0PK00 339 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 SUPT3HB4E1H0 165 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 F5H5T6 163 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 CTCFP49711 727 aaPredicted RBP19.72■□□□□ 0.75
PTPRE-201ENST00000254667 LAMTOR4Q0VGL1 99 aa19.72■□□□□ 0.75
PTPRE-201ENST00000254667 ELAVL2Q12926 359 aaKnown RBP19.72■□□□□ 0.75
PTPRE-201ENST00000254667 SPDYAQ5MJ70 313 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms