RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 NIF3L1Q9GZT8 377 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 AS3MTQ9HBK9 375 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 PIH1D1Q9NWS0 290 aaKnown RBP22.4■■□□□ 1.18
TRIM28-201ENST00000253024 CHKBQ9Y259 395 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 HEY1Q9Y5J3 304 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 FARP2O94887 1054 aaPredicted RBP22.39■■□□□ 1.18
TRIM28-201ENST00000253024 NFICP08651 508 aa22.39■■□□□ 1.18
TRIM28-201ENST00000253024 MSH2P43246 934 aa22.39■■□□□ 1.18
TRIM28-201ENST00000253024 SESN3P58005 492 aa22.39■■□□□ 1.18
TRIM28-201ENST00000253024 CAV1Q03135 178 aa22.39■■□□□ 1.18
TRIM28-201ENST00000253024 MTFR1Q15390 333 aa22.39■■□□□ 1.18
TRIM28-201ENST00000253024 DUOXA2Q1HG44 320 aa22.39■■□□□ 1.18
TRIM28-201ENST00000253024 SYDE1Q6ZW31 735 aaPredicted RBP22.39■■□□□ 1.18
TRIM28-201ENST00000253024 CENPUQ71F23 418 aa22.39■■□□□ 1.18
TRIM28-201ENST00000253024 MAGEB5Q9BZ81 275 aa22.39■■□□□ 1.18
TRIM28-201ENST00000253024 NUMBLQ9Y6R0 609 aa22.39■■□□□ 1.18
TRIM28-201ENST00000253024 CLUHO75153 1309 aa22.39■■□□□ 1.17
TRIM28-201ENST00000253024 GHRHRQ02643 423 aa22.39■■□□□ 1.17
TRIM28-201ENST00000253024 MAPK6Q16659 721 aa22.39■■□□□ 1.17
TRIM28-201ENST00000253024 RNASEH2BQ5TBB1 312 aaKnown RBP22.39■■□□□ 1.17
TRIM28-201ENST00000253024 TRIM68Q6AZZ1 485 aa22.39■■□□□ 1.17
TRIM28-201ENST00000253024 FBXO16Q8IX29 292 aaPredicted RBP22.39■■□□□ 1.17
TRIM28-201ENST00000253024 CDHR1Q96JP9 859 aa22.39■■□□□ 1.17
TRIM28-201ENST00000253024 WDR83Q9BRX9 315 aaKnown RBP22.39■■□□□ 1.17
TRIM28-201ENST00000253024 MAFGO15525 162 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 MSCO60682 206 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 RPL22P35268 128 aaKnown RBP22.38■■□□□ 1.17
TRIM28-201ENST00000253024 CTAGE3PQ8IX95 158 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 TTC17Q96AE7 1141 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 CFAP36Q96G28 342 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 PRR11Q96HE9 360 aaPredicted RBP22.38■■□□□ 1.17
TRIM28-201ENST00000253024 LPIN3Q9BQK8 851 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 RXFP1Q9HBX9 757 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 MCM8Q9UJA3 840 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 COL11A1P12107 1806 aaPredicted RBP22.38■■□□□ 1.17
TRIM28-201ENST00000253024 ASMTLO95671 621 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 ERBB2P04626 1255 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 ITGB3P05106 788 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 YWHAGP61981 247 aaKnown RBP eCLIP22.38■■□□□ 1.17
TRIM28-201ENST00000253024 CLDN10P78369 228 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 DCAF15Q66K64 600 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 BRSK2Q8IWQ3 736 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 C12orf29Q8N999 325 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 CPT1BQ92523 772 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 SDCBP2Q9H190 292 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 MAP3K20Q9NYL2 800 aaKnown RBP22.38■■□□□ 1.17
TRIM28-201ENST00000253024 XPO7Q9UIA9 1087 aaKnown RBP22.38■■□□□ 1.17
TRIM28-201ENST00000253024 ADGRA2Q96PE1 1338 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 IRX4P78413 519 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 SPARCL1Q14515 664 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 MDH1BQ5I0G3 518 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 PPP1R21Q6ZMI0 780 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 TRIM72Q6ZMU5 477 aa22.38■■□□□ 1.17
TRIM28-201ENST00000253024 SOWAHBA6NEL2 793 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 M0QYV0 167 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 LDHAP00338 332 aaKnown RBP22.37■■□□□ 1.17
TRIM28-201ENST00000253024 IQCF3P0C7M6 154 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 EPHB2P29323 1055 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 ELF1P32519 619 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 OASLQ15646 514 aaKnown RBP22.37■■□□□ 1.17
TRIM28-201ENST00000253024 FAM102AQ5T9C2 384 aaPredicted RBP22.37■■□□□ 1.17
TRIM28-201ENST00000253024 LRRC6Q86X45 466 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 TCP10LQ8TDR4 215 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 LRRC37BQ96QE4 947 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 PAFAH2Q99487 392 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 MRPL4Q9BYD3 311 aaKnown RBP22.37■■□□□ 1.17
TRIM28-201ENST00000253024 NRBP2Q9NSY0 501 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 CCDC195A0A1B0GUA6 201 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 CALB1P05937 261 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 SPATA18Q8TC71 538 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 P3H4Q92791 437 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 PTPRN2Q92932 1015 aa22.37■■□□□ 1.17
TRIM28-201ENST00000253024 UTP4Q969X6 686 aaKnown RBP22.37■■□□□ 1.17
TRIM28-201ENST00000253024 NKX1-2Q9UD57 310 aaPredicted RBP22.37■■□□□ 1.17
TRIM28-201ENST00000253024 TOM1L1O75674 476 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 RBP3P10745 1247 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 EIF3EP60228 445 aaKnown RBP22.36■■□□□ 1.17
TRIM28-201ENST00000253024 GALNTL6Q49A17 601 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 MTDHQ86UE4 582 aaKnown RBP22.36■■□□□ 1.17
TRIM28-201ENST00000253024 BBOF1Q8ND07 529 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 RFWD2Q8NHY2 731 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 HEXIM2Q96MH2 286 aaKnown RBP22.36■■□□□ 1.17
TRIM28-201ENST00000253024 PDGFCQ9NRA1 345 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 FER1L6Q2WGJ9 1857 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 ASPAP45381 313 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 AMHR2Q16671 573 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 TAF1BQ53T94 588 aaPredicted RBP22.36■■□□□ 1.17
TRIM28-201ENST00000253024 OTOAQ7RTW8 1153 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 ACO2Q99798 780 aaKnown RBP22.36■■□□□ 1.17
TRIM28-201ENST00000253024 PRKAG3Q9UGI9 489 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 STYXL1Q9Y6J8 313 aa22.36■■□□□ 1.17
TRIM28-201ENST00000253024 H0YCG3 227 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 ATP2A1O14983 1001 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 MIPP30301 263 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 SETDB1Q15047 1291 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 PLEKHG4Q58EX7 1191 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.35■■□□□ 1.17
TRIM28-201ENST00000253024 LGALS13Q9UHV8 139 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 GSTA1P08263 222 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 CPA2P48052 419 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms