RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 NFE2Q16621 373 aaPredicted RBP28.93■■■□□ 2.22
CHMP4B-201ENST00000217402 FUKQ8N0W3 1084 aa28.93■■■□□ 2.22
CHMP4B-201ENST00000217402 ATAD1Q8NBU5 361 aa28.93■■■□□ 2.22
CHMP4B-201ENST00000217402 SLC20A1Q8WUM9 679 aa28.93■■■□□ 2.22
CHMP4B-201ENST00000217402 SYN2Q92777 582 aaPredicted RBP28.93■■■□□ 2.22
CHMP4B-201ENST00000217402 ZNF518BQ9C0D4 1074 aa28.93■■■□□ 2.22
CHMP4B-201ENST00000217402 MYO7AQ13402 2215 aa28.93■■■□□ 2.22
CHMP4B-201ENST00000217402 MYO9BQ13459 2157 aa28.93■■■□□ 2.22
CHMP4B-201ENST00000217402 O00370 1275 aa28.92■■■□□ 2.22
CHMP4B-201ENST00000217402 SKILP12757 684 aa28.92■■■□□ 2.22
CHMP4B-201ENST00000217402 ADCY1Q08828 1119 aa28.92■■■□□ 2.22
CHMP4B-201ENST00000217402 TSR1Q2NL82 804 aaKnown RBP28.92■■■□□ 2.22
CHMP4B-201ENST00000217402 GOLGA7BQ2TAP0 167 aa28.92■■■□□ 2.22
CHMP4B-201ENST00000217402 C4orf50Q6ZRC1 276 aa28.92■■■□□ 2.22
CHMP4B-201ENST00000217402 ZNF461Q8TAF7 563 aa28.92■■■□□ 2.22
CHMP4B-201ENST00000217402 ZNF606Q8WXB4 792 aa28.92■■■□□ 2.22
CHMP4B-201ENST00000217402 NOCTQ9UK39 431 aaKnown RBP28.92■■■□□ 2.22
CHMP4B-201ENST00000217402 PCDHB5Q9Y5E4 795 aa28.92■■■□□ 2.22
CHMP4B-201ENST00000217402 VNN2O95498 520 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 SPATA31D3P0C874 917 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 KLHL30Q0D2K2 578 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 ARID5BQ14865 1188 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 TDRD12Q587J7 1177 aaKnown RBP28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 ARHGAP17Q68EM7 881 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 SPATA31D4Q6ZUB0 917 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 FAM35AQ86V20 835 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 TTC9BQ8N6N2 239 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 TSPAN16Q9UKR8 245 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 TGM5O43548 720 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 CLASP2O75122 1294 aaKnown RBP28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 ABLIM3O94929 683 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 BDNFP23560 247 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 PAQR9Q6ZVX9 377 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 Q7L0L9 218 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 HNRNPABQ99729 332 aaKnown RBP28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 HAUS4Q9H6D7 363 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 TLE6Q9H808 572 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 KRT82Q9NSB4 513 aa28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 ZNHIT6Q9NWK9 470 aaKnown RBP28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 AFF4Q9UHB7 1163 aaKnown RBP28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 WDR3Q9UNX4 943 aaKnown RBP eCLIP28.91■■■□□ 2.22
CHMP4B-201ENST00000217402 MED7O43513 233 aa28.9■■■□□ 2.22
CHMP4B-201ENST00000217402 CFHP08603 1231 aa28.9■■■□□ 2.22
CHMP4B-201ENST00000217402 NRIP1P48552 1158 aa28.9■■■□□ 2.22
CHMP4B-201ENST00000217402 SMARCB1Q12824 385 aa28.9■■■□□ 2.22
CHMP4B-201ENST00000217402 TPGS2Q68CL5 300 aa28.9■■■□□ 2.22
CHMP4B-201ENST00000217402 CRISPLD1Q9H336 500 aa28.9■■■□□ 2.22
CHMP4B-201ENST00000217402 SLC27A5Q9Y2P5 690 aa28.9■■■□□ 2.22
CHMP4B-201ENST00000217402 MICAL2O94851 1124 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 GLUD1P00367 558 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 MMEP08473 750 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 CYP2F1P24903 491 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 HNRNPH3P31942 346 aaKnown RBP28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 PRKCIP41743 596 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 CLCN4P51793 760 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 DUSP4Q13115 394 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 ADGRE1Q14246 886 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 CNGA2Q16280 664 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 HGSNATQ68CP4 663 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 WDR59Q6PJI9 974 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 PASD1Q8IV76 773 aa28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 DDX1Q92499 740 aaKnown RBP28.89■■■□□ 2.22
CHMP4B-201ENST00000217402 ATP8B3O60423 1300 aa28.89■■■□□ 2.21
CHMP4B-201ENST00000217402 M0QYV0 167 aa28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 SERPING1P05155 500 aa28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 ATF2P15336 505 aa28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 IGFBP4P22692 258 aa28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 CFAP221Q4G0U5 840 aa28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 LCLAT1Q6UWP7 414 aa28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 CCDC186Q7Z3E2 898 aa28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 SPPL2BQ8TCT7 592 aa28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 C2orf15Q8WU43 125 aaKnown RBP28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 FUBP3Q96I24 572 aaKnown RBP eCLIP28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 SEPT5Q99719 369 aaPredicted RBP28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 PDCL3Q9H2J4 239 aa28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 NSUN3Q9H649 340 aaKnown RBP28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 CYP4F11Q9HBI6 524 aa28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 HESX1Q9UBX0 185 aa28.88■■■□□ 2.21
CHMP4B-201ENST00000217402 AP1G2O75843 785 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 SEC24AO95486 1093 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 PLEKP08567 350 aaPredicted RBP28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 CACNA2D1P54289 1103 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 CDR2Q01850 454 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 STILQ15468 1287 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 TTC30AQ86WT1 665 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 UBA3Q8TBC4 463 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 PPP2R3CQ969Q6 453 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 SMARCD1Q96GM5 515 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 PDLIM2Q96JY6 352 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 SEPT11Q9NVA2 429 aaKnown RBP28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 SOAT2O75908 522 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 FAM200BP0CF97 657 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 CHRNB2P17787 502 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 GTF2F1P35269 517 aaKnown RBP eCLIP28.87■■■□□ 2.211e-19■■■■■ 72.8
CHMP4B-201ENST00000217402 GSDMDP57764 484 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 DUSP6Q16828 381 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 MGAT5BQ3V5L5 792 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 TCEAL5Q5H9L2 206 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 LLGL2Q6P1M3 1020 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 DENND1BQ6P3S1 775 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms