RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MACROD1Q9BQ69 325 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 THAP7Q9BT49 309 aaPredicted RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 GATA5Q9BWX5 397 aaPredicted RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 MS4A5Q9H3V2 200 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 LDAHQ9H6V9 325 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 MRPL44Q9H9J2 332 aaKnown RBP0.84□□□□□ -2.27
VPS35-212ENST00000640313 TMEM8AQ9HCN3 771 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 CD93Q9NPY3 652 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 ZBTB40Q9NUA8 1239 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 SIRPGQ9P1W8 387 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 ICAM5Q9UMF0 924 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 ADAMTS5Q9UNA0 930 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 PCDHAC2Q9Y5I4 1007 aa0.84□□□□□ -2.27
VPS35-212ENST00000640313 EVPLQ92817 2033 aa0.84□□□□□ -2.28
VPS35-212ENST00000640313 KIF26BQ2KJY2 2108 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 SNED1Q8TER0 1413 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 TCRBV5S1A1TA0A578 114 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 CCDC85CA6NKD9 419 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 FOXN3O00409 490 aaPredicted RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 SPTLC2O15270 562 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 SLC16A3O15427 465 aaKnown RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 KDM1AO60341 852 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 TLR5O60602 858 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 SLC43A1O75387 559 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 SERPINB2P05120 415 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 IL6RP08887 468 aaPredicted RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 NPSP0C0P6 89 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 CTSAP10619 480 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 MTHFD1P11586 935 aaKnown RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 POU3F2P20265 443 aaPredicted RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 DDCP20711 480 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 ERCC5P28715 1186 aaPredicted RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 VEGFCP49767 419 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 RRP1P56182 461 aaKnown RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 CTXN1P60606 82 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 OCRLQ01968 901 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 CREMQ03060 361 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 ZNF91Q05481 1191 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 SEPT2Q15019 361 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 UGT8Q16880 541 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 ANO4Q32M45 955 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 TBC1D25Q3MII6 688 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 MUM1L1Q5H9M0 696 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 TAPT1Q6NXT6 567 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 KIRREL2Q6UWL6 708 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 RASSF3Q86WH2 238 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 ANKRD13BQ86YJ7 626 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 SPATA2LQ8IUW3 424 aaPredicted RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 HOMEZQ8IX15 550 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 ZGPATQ8N5A5 531 aaKnown RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 TERB1Q8NA31 727 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 SMC1BQ8NDV3 1235 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 DBF4BQ8NFT6 615 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 TSPEARQ8WU66 669 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 HES6Q96HZ4 224 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 TRIB1Q96RU8 372 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 NTPCRQ9BSD7 190 aaKnown RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 EFHD1Q9BUP0 239 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 ARHGAP39Q9C0H5 1083 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 C11orf54Q9H0W9 315 aaPredicted RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 CDCP1Q9H5V8 836 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 SEMA4BQ9NPR2 832 aaPredicted RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 SERHLQ9NQF3 203 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 TMEM184CQ9NVA4 438 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 THG1LQ9NWX6 298 aaKnown RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 JKAMPQ9P055 326 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 DPP7Q9UHL4 492 aa0.83□□□□□ -2.28
VPS35-212ENST00000640313 RUVBL1Q9Y265 456 aaKnown RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 ZSCAN21Q9Y5A6 473 aaPredicted RBP0.83□□□□□ -2.28
VPS35-212ENST00000640313 SCN5AQ14524 2016 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 IGLV5-39A0A0G2JS06 123 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 ZNF891A8MT65 544 aaPredicted RBP0.82□□□□□ -2.28
VPS35-212ENST00000640313 BTBD19C9JJ37 291 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 TMEM232C9JQI7 657 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 NEMP1O14524 444 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 PPM1DO15297 605 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 LDB3O75112 727 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 RAB11FIP3O75154 756 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 RFPL3O75679 317 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 ANXA1P04083 346 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 CYP19A1P11511 503 aaPredicted RBP0.82□□□□□ -2.28
VPS35-212ENST00000640313 ENGP17813 658 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 SDSP20132 328 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 LPOP22079 712 aaPredicted RBP0.82□□□□□ -2.28
VPS35-212ENST00000640313 ENPP1P22413 925 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 CDC25AP30304 524 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 ARRB2P32121 409 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 LIPAP38571 399 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 LSSP48449 732 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 RPS13P62277 151 aaKnown RBP0.82□□□□□ -2.28
VPS35-212ENST00000640313 MRPS9P82933 396 aaKnown RBP0.82□□□□□ -2.28
VPS35-212ENST00000640313 CDK17Q00537 523 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 CFHR1Q03591 330 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 LTBQ06643 244 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 MGAT2Q10469 447 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 MTX1Q13505 466 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 PABPC1LQ4VXU2 614 aaKnown RBP0.82□□□□□ -2.28
VPS35-212ENST00000640313 C4orf46Q504U0 113 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 C2orf27AQ580R0 203 aa0.82□□□□□ -2.28
VPS35-212ENST00000640313 TREML2Q5T2D2 321 aa0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms