RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 ZMYND8Q9ULU4 1186 aaPredicted RBP15.03■□□□□ -0
CLN3-242ENST00000635958 PCDHGC3Q9UN70 934 aa15.03■□□□□ -0
CLN3-242ENST00000635958 FAN1Q9Y2M0 1017 aa15.03■□□□□ -0
CLN3-242ENST00000635958 F8W810 466 aa15.02■□□□□ -0
CLN3-242ENST00000635958 TRAPPC3O43617 180 aa15.02■□□□□ -0
CLN3-242ENST00000635958 MMEP08473 750 aa15.02■□□□□ -0
CLN3-242ENST00000635958 VDRP11473 427 aa15.02■□□□□ -0
CLN3-242ENST00000635958 ODC1P11926 461 aa15.02■□□□□ -0
CLN3-242ENST00000635958 TYMPP19971 482 aa15.02■□□□□ -0
CLN3-242ENST00000635958 BRCC3P46736 316 aa15.02■□□□□ -0
CLN3-242ENST00000635958 HTRA4P83105 476 aaPredicted RBP15.02■□□□□ -0
CLN3-242ENST00000635958 CYP27A1Q02318 531 aa15.02■□□□□ -0
CLN3-242ENST00000635958 OR6B3Q8NGW1 331 aa15.02■□□□□ -0
CLN3-242ENST00000635958 PHOSPHO2Q8TCD6 241 aa15.02■□□□□ -0
CLN3-242ENST00000635958 TFAP2BQ92481 460 aa15.02■□□□□ -0
CLN3-242ENST00000635958 LBHD1Q9BQE6 289 aaPredicted RBP15.02■□□□□ -0
CLN3-242ENST00000635958 SNX25Q9H3E2 840 aa15.02■□□□□ -0
CLN3-242ENST00000635958 PCDHB8Q9UN66 801 aa15.02■□□□□ -0
CLN3-242ENST00000635958 PCDHA13Q9Y5I0 950 aa15.02■□□□□ -0
CLN3-242ENST00000635958 ATP8B3O60423 1300 aa15.02□□□□□ -0.01
CLN3-242ENST00000635958 CARNS1A5YM72 827 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 A8MXQ7 604 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 THAP12O43422 761 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 GJB5O95377 273 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 CALCAP01258 141 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 CYP1A1P04798 512 aaPredicted RBP15.01□□□□□ -0.01
CLN3-242ENST00000635958 LMO2P25791 158 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 MAGEA1P43355 309 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 CNGA2Q16280 664 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 PAN2Q504Q3 1202 aaKnown RBP15.01□□□□□ -0.01
CLN3-242ENST00000635958 RASIP1Q5U651 963 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 TRIM72Q6ZMU5 477 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 OSTM1Q86WC4 334 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 PALB2Q86YC2 1186 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 DNAI2Q9GZS0 605 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 ISCUQ9H1K1 167 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 MARCH5Q9NX47 278 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 CXXC1Q9P0U4 656 aaPredicted RBP15.01□□□□□ -0.01
CLN3-242ENST00000635958 HCSTQ9UBK5 93 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 ADAM28Q9UKQ2 775 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 PRG3Q9Y2Y8 225 aaPredicted RBP15.01□□□□□ -0.01
CLN3-242ENST00000635958 MED7O43513 233 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 TADA2AO75478 443 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 EFEMP2O95967 443 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 UNGP13051 313 aaPredicted RBP15.01□□□□□ -0.01
CLN3-242ENST00000635958 BCAR1P56945 870 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 STILQ15468 1287 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 MAP9Q49MG5 647 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 CCDC122Q5T0U0 273 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 WDR93Q6P2C0 686 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 TMCO2Q7Z6W1 182 aaPredicted RBP15.01□□□□□ -0.01
CLN3-242ENST00000635958 TNIP3Q96KP6 325 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 HEXIM2Q96MH2 286 aaKnown RBP15.01□□□□□ -0.01
CLN3-242ENST00000635958 VIPAS39Q9H9C1 493 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 LUC7LQ9NQ29 371 aaKnown RBP15.01□□□□□ -0.01
CLN3-242ENST00000635958 LZTFL1Q9NQ48 299 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 INTUQ9ULD6 942 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 NR2E3Q9Y5X4 410 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 PTPRSQ13332 1948 aa15.01□□□□□ -0.01
CLN3-242ENST00000635958 ZBBXA8MT70 800 aa15□□□□□ -0.01
CLN3-242ENST00000635958 I3L4J1 428 aa15□□□□□ -0.01
CLN3-242ENST00000635958 SYN3O14994 580 aa15□□□□□ -0.01
CLN3-242ENST00000635958 PJA2O43164 708 aa15□□□□□ -0.01
CLN3-242ENST00000635958 SEC31AO94979 1220 aaKnown RBP15□□□□□ -0.01
CLN3-242ENST00000635958 BRD2P25440 801 aaKnown RBP15□□□□□ -0.01
CLN3-242ENST00000635958 CDH5P33151 784 aaPredicted RBP15□□□□□ -0.01
CLN3-242ENST00000635958 ALDH7A1P49419 539 aaKnown RBP15□□□□□ -0.01
CLN3-242ENST00000635958 VAV2P52735 878 aa15□□□□□ -0.01
CLN3-242ENST00000635958 CLEC16AQ2KHT3 1053 aa15□□□□□ -0.01
CLN3-242ENST00000635958 SGO2Q562F6 1265 aa15□□□□□ -0.01
CLN3-242ENST00000635958 BEND6Q5SZJ8 279 aaPredicted RBP15□□□□□ -0.01
CLN3-242ENST00000635958 ARHGAP17Q68EM7 881 aa15□□□□□ -0.01
CLN3-242ENST00000635958 ACOT1Q86TX2 421 aa15□□□□□ -0.01
CLN3-242ENST00000635958 HASPINQ8TF76 798 aa15□□□□□ -0.01
CLN3-242ENST00000635958 SLC9A7Q96T83 725 aa15□□□□□ -0.01
CLN3-242ENST00000635958 ZNF518BQ9C0D4 1074 aa15□□□□□ -0.01
CLN3-242ENST00000635958 LHX5Q9H2C1 402 aa15□□□□□ -0.01
CLN3-242ENST00000635958 PUF60Q9UHX1 559 aaKnown RBP15□□□□□ -0.01
CLN3-242ENST00000635958 O00370 1275 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 RTN2O75298 545 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 SASH3O75995 380 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 OAZ2O95190 189 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 LSM8O95777 96 aaKnown RBP14.99□□□□□ -0.01
CLN3-242ENST00000635958 CFHP08603 1231 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 PDGFRBP09619 1106 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 CD19P15391 556 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 CKAP4Q07065 602 aaKnown RBP14.99□□□□□ -0.01
CLN3-242ENST00000635958 ELAVL2Q12926 359 aaKnown RBP14.99□□□□□ -0.01
CLN3-242ENST00000635958 ORC1Q13415 861 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 BTG3Q14201 252 aaPredicted RBP14.99□□□□□ -0.01
CLN3-242ENST00000635958 FAM117BQ6P1L5 589 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 LCLAT1Q6UWP7 414 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 METTL23Q86XA0 190 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 RUBCNQ92622 972 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 RTP3Q9BQQ7 232 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 ACBD6Q9BR61 282 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 MTIF3Q9H2K0 278 aaKnown RBP14.99□□□□□ -0.01
CLN3-242ENST00000635958 MED4Q9NPJ6 270 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 DDX43Q9NXZ2 648 aaKnown RBP14.99□□□□□ -0.01
CLN3-242ENST00000635958 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms