RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 ADI1Q9BV57 179 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 ACTRT3Q9BYD9 372 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 ACE2Q9BYF1 805 aaPredicted RBP1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 FAM126AQ9BYI3 521 aaPredicted RBP1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 IMPG2Q9BZV3 1241 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 HIPK2Q9H2X6 1198 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 GREM2Q9H772 168 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 VTA1Q9NP79 307 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 RBM12Q9NTZ6 932 aaKnown RBP1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 MKS1Q9NXB0 559 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 ICKQ9UPZ9 632 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 PCDHGA2Q9Y5H1 932 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 MRFAP1Q9Y605 127 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 TTC37Q6PGP7 1564 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 SPATA31D1Q6ZQQ2 1576 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 CADPSQ9ULU8 1353 aa1.46□□□□□ -2.18
SMARCB1-209ENST00000635578 C3P01024 1663 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 WDR17Q8IZU2 1322 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 CCDC88BA6NC98 1476 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 KIF14Q15058 1648 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 A0A0B4J269 797 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 E5RJQ4 531 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 F5H697 171 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 H3BNX3 289 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 QSOX1O00391 747 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 ZNF213O14771 459 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 GPR39O43194 453 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 KATNA1O75449 491 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 ENDOD1O94919 500 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 CRYABP02511 175 aaKnown RBP1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 FGBP02675 491 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 AMY1AP04745 511 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 PDHA1P08559 390 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 FAM163BP0C2L3 166 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 CT47B1P0C2W7 299 aaPredicted RBP1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 BPIP17213 487 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 DDCP20711 480 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 ENPP1P22413 925 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 PCSK6P29122 969 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 SLC6A9P48067 706 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 IGBP1P78318 339 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 TUBB3Q13509 450 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 ERV3-1Q14264 604 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 SEPT2Q15019 361 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 PTPN21Q16825 1174 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 PTPROQ16827 1216 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 ABCB5Q2M3G0 1257 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 TRIM71Q2Q1W2 868 aaKnown RBP1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 CCDC157Q569K6 752 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 TAPT1Q6NXT6 567 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 NAPRTQ6XQN6 538 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 ZNF551Q7Z340 670 aaPredicted RBP1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 FAM9AQ8IZU1 332 aaPredicted RBP1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 AFAP1L2Q8N4X5 818 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 TBC1D5Q92609 795 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 FATE1Q969F0 183 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 RAX2Q96IS3 184 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 THOC3Q96J01 351 aaKnown RBP1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 LRIG1Q96JA1 1093 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 LYZL4Q96KX0 146 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 KLHL32Q96NJ5 620 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 ASB2Q96Q27 587 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 MMS19Q96T76 1030 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 MACROD1Q9BQ69 325 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 TRMOQ9BU70 441 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 ALG8Q9BVK2 526 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 CCDC8Q9H0W5 538 aaPredicted RBP1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 C11orf54Q9H0W9 315 aaPredicted RBP1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 FOXP1Q9H334 677 aaPredicted RBP1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 TMX1Q9H3N1 280 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 IFT122Q9HBG6 1241 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 ARHGEF3Q9NR81 526 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 AASDHPPTQ9NRN7 309 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 HOMER2Q9NSB8 354 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 SERTAD4Q9NUC0 356 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 EHD3Q9NZN3 535 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 INTUQ9ULD6 942 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 SLC45A2Q9UMX9 530 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 ZBTB32Q9Y2Y4 487 aaPredicted RBP1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 NEU2Q9Y3R4 380 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 COL4A3BPQ9Y5P4 624 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 SQORQ9Y6N5 450 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 NALCNQ8IZF0 1738 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 CDC42BPBQ9Y5S2 1711 aa1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 CLTCQ00610 1675 aaKnown RBP1.45□□□□□ -2.18
SMARCB1-209ENST00000635578 STRCP1A6NGW2 1772 aa1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 STRCQ7RTU9 1775 aa1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 ABCA6Q8N139 1617 aa1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 MYO3AQ8NEV4 1616 aa1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 AQRO60306 1485 aaKnown RBP eCLIP1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 CFTRP13569 1480 aa1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 IFT140Q96RY7 1462 aa1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 MYBBP1AQ9BQG0 1328 aaKnown RBP1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 NOTCH4Q99466 2003 aa1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 PCF11O94913 1555 aaKnown RBP1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 IQGAP2Q13576 1575 aa1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 LOC105371045A0A1W2PR82 267 aa1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 KLHL33A6NCF5 533 aa1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 SERINC4A6NH21 518 aa1.44□□□□□ -2.18
SMARCB1-209ENST00000635578 FAM90A8PA6NJQ4 464 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms