RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 FAM213AQ9BRX8 229 aa25.61■■□□□ 1.69
CPSF1-214ENST00000622776 PI4K2AQ9BTU6 479 aa25.61■■□□□ 1.69
CPSF1-214ENST00000622776 MRPL44Q9H9J2 332 aaKnown RBP25.61■■□□□ 1.69
CPSF1-214ENST00000622776 HPS4Q9NQG7 708 aa25.61■■□□□ 1.69
CPSF1-214ENST00000622776 CCDC39Q9UFE4 941 aa25.61■■□□□ 1.69
CPSF1-214ENST00000622776 EXOC7Q9UPT5 735 aa25.61■■□□□ 1.69
CPSF1-214ENST00000622776 ZNF638Q14966 1978 aaKnown RBP25.61■■□□□ 1.69
CPSF1-214ENST00000622776 DENND4CQ5VZ89 1909 aa25.61■■□□□ 1.69
CPSF1-214ENST00000622776 POLR2BP30876 1174 aaKnown RBP25.6■■□□□ 1.69
CPSF1-214ENST00000622776 GPR15P49685 360 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 WNT7BP56706 349 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 TFAMQ00059 246 aaKnown RBP25.6■■□□□ 1.69
CPSF1-214ENST00000622776 BFSP1Q12934 665 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 RUNX3Q13761 415 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 NFE2Q16621 373 aaPredicted RBP25.6■■□□□ 1.69
CPSF1-214ENST00000622776 TMEM196Q5HYL7 178 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 TXNDC8Q6A555 127 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 PKN3Q6P5Z2 889 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 MRPS31Q92665 395 aaKnown RBP25.6■■□□□ 1.69
CPSF1-214ENST00000622776 ACCSQ96QU6 501 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 EBF3Q9H4W6 596 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 TDP1Q9NUW8 608 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 TBC1D7Q9P0N9 293 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 AGAP1Q9UPQ3 857 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 CLIC4Q9Y696 253 aa25.6■■□□□ 1.69
CPSF1-214ENST00000622776 MAP1BP46821 2468 aaKnown RBP25.59■■□□□ 1.69
CPSF1-214ENST00000622776 MYMKA6NI61 221 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 SOBPA7XYQ1 873 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 TULP1O00294 542 aaPredicted RBP25.59■■□□□ 1.69
CPSF1-214ENST00000622776 CSH1P0DML2 217 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 CSH2P0DML3 217 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 GAP43P17677 238 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 GRSF1Q12849 480 aaKnown RBP eCLIP25.59■■□□□ 1.69
CPSF1-214ENST00000622776 L1TD1Q5T7N2 865 aaKnown RBP25.59■■□□□ 1.69
CPSF1-214ENST00000622776 TRIM68Q6AZZ1 485 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 FSTL4Q6MZW2 842 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 MON1AQ86VX9 555 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 BRSK2Q8IWQ3 736 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 PDCL2Q8N4E4 241 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 STKLD1Q8NE28 680 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 ZSWIM2Q8NEG5 633 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 DNAJC19Q96DA6 116 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 SAAL1Q96ER3 474 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 KIF9Q9HAQ2 790 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 UPF2Q9HAU5 1272 aaKnown RBP25.59■■□□□ 1.69
CPSF1-214ENST00000622776 L1RE1Q9UN81 338 aa25.59■■□□□ 1.69
CPSF1-214ENST00000622776 MAGED2Q9UNF1 606 aaPredicted RBP25.59■■□□□ 1.69
CPSF1-214ENST00000622776 VPS37CA5D8V6 355 aaPredicted RBP25.58■■□□□ 1.69
CPSF1-214ENST00000622776 OTOL1A6NHN0 477 aaPredicted RBP25.58■■□□□ 1.69
CPSF1-214ENST00000622776 TRDMT1O14717 391 aaKnown RBP25.58■■□□□ 1.69
CPSF1-214ENST00000622776 ITGB3P05106 788 aa25.58■■□□□ 1.69
CPSF1-214ENST00000622776 SDHAF4Q5VUM1 108 aa25.58■■□□□ 1.69
CPSF1-214ENST00000622776 RRAGBQ5VZM2 374 aa25.58■■□□□ 1.69
CPSF1-214ENST00000622776 SV2BQ7L1I2 683 aa25.58■■□□□ 1.69
CPSF1-214ENST00000622776 C1orf127Q8N9H9 656 aa25.58■■□□□ 1.69
CPSF1-214ENST00000622776 CACTINQ8WUQ7 758 aaKnown RBP25.58■■□□□ 1.69
CPSF1-214ENST00000622776 LEO1Q8WVC0 666 aaPredicted RBP25.58■■□□□ 1.69
CPSF1-214ENST00000622776 CHFRQ96EP1 664 aa25.58■■□□□ 1.69
CPSF1-214ENST00000622776 ACBD6Q9BR61 282 aa25.58■■□□□ 1.69
CPSF1-214ENST00000622776 FBXO2Q9UK22 296 aaPredicted RBP25.58■■□□□ 1.69
CPSF1-214ENST00000622776 GDF9O60383 454 aa25.57■■□□□ 1.68
CPSF1-214ENST00000622776 FOXD2O60548 495 aaPredicted RBP25.57■■□□□ 1.68
CPSF1-214ENST00000622776 HUS1O60921 280 aa25.57■■□□□ 1.68
CPSF1-214ENST00000622776 DDR2Q16832 855 aa25.57■■□□□ 1.68
CPSF1-214ENST00000622776 CC2D1AQ6P1N0 951 aaPredicted RBP25.57■■□□□ 1.68
CPSF1-214ENST00000622776 RIN3Q8TB24 985 aa25.57■■□□□ 1.68
CPSF1-214ENST00000622776 DDX43Q9NXZ2 648 aaKnown RBP25.57■■□□□ 1.68
CPSF1-214ENST00000622776 SRPRBQ9Y5M8 271 aaKnown RBP25.57■■□□□ 1.68
CPSF1-214ENST00000622776 ATG13O75143 517 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 GCNT3O95395 438 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 LDHAP00338 332 aaKnown RBP25.56■■□□□ 1.68
CPSF1-214ENST00000622776 ADRB1P08588 477 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 ARSAP15289 507 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 ACAT1P24752 427 aaKnown RBP25.56■■□□□ 1.68
CPSF1-214ENST00000622776 PXNP49023 591 aaPredicted RBP25.56■■□□□ 1.68
CPSF1-214ENST00000622776 RPL10AP62906 217 aaKnown RBP25.56■■□□□ 1.68
CPSF1-214ENST00000622776 AMPD2Q01433 879 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 ZNF268Q14587 947 aaPredicted RBP25.56■■□□□ 1.68
CPSF1-214ENST00000622776 PPM1JQ5JR12 505 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 INTS6LQ5JSJ4 861 aaKnown RBP25.56■■□□□ 1.68
CPSF1-214ENST00000622776 SCARA3Q6AZY7 606 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 TMEM86AQ8N2M4 240 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 LRRC52Q8N7C0 313 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 CXorf38Q8TB03 319 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 GAB3Q8WWW8 586 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 CLIC6Q96NY7 704 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 ABCB6Q9NP58 842 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 RBAKQ9NYW8 714 aaPredicted RBP25.56■■□□□ 1.68
CPSF1-214ENST00000622776 UXTQ9UBK9 157 aaPredicted RBP25.56■■□□□ 1.68
CPSF1-214ENST00000622776 PCDHB13Q9Y5F0 798 aa25.56■■□□□ 1.68
CPSF1-214ENST00000622776 CCDC163A0A0D9SF12 145 aa25.55■■□□□ 1.68
CPSF1-214ENST00000622776 GARTP22102 1010 aa25.55■■□□□ 1.68
CPSF1-214ENST00000622776 CYP2F1P24903 491 aa25.55■■□□□ 1.68
CPSF1-214ENST00000622776 TXLNAP40222 546 aa25.55■■□□□ 1.68
CPSF1-214ENST00000622776 CASP5P51878 434 aa25.55■■□□□ 1.68
CPSF1-214ENST00000622776 MYL7Q01449 175 aa25.55■■□□□ 1.68
CPSF1-214ENST00000622776 SYCP3Q8IZU3 236 aa25.55■■□□□ 1.68
CPSF1-214ENST00000622776 CSGALNACT2Q8N6G5 542 aa25.55■■□□□ 1.68
CPSF1-214ENST00000622776 FAM84AQ96KN4 292 aa25.55■■□□□ 1.68
CPSF1-214ENST00000622776 PKMYT1Q99640 499 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms