RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 MDH1BQ5I0G3 518 aa11.15□□□□□ -0.62
VPS11-208ENST00000621676 FAXCQ5TGI0 409 aa11.15□□□□□ -0.62
VPS11-208ENST00000621676 CCDC70Q6NSX1 233 aa11.15□□□□□ -0.62
VPS11-208ENST00000621676 KCTD17Q8N5Z5 321 aa11.15□□□□□ -0.62
VPS11-208ENST00000621676 SMG8Q8ND04 991 aaKnown RBP11.15□□□□□ -0.62
VPS11-208ENST00000621676 UBLCP1Q8WVY7 318 aaPredicted RBP11.15□□□□□ -0.62
VPS11-208ENST00000621676 CGNQ9P2M7 1197 aaKnown RBP11.15□□□□□ -0.62
VPS11-208ENST00000621676 ASIC3Q9UHC3 531 aa11.15□□□□□ -0.62
VPS11-208ENST00000621676 GTF2IRD1Q9UHL9 959 aa11.15□□□□□ -0.62
VPS11-208ENST00000621676 TRIP11Q15643 1979 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 KPNA7A9QM74 516 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 HUS1O60921 280 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 KRT14P02533 472 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 ERBB2P04626 1255 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 TM4SF4P48230 202 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 NOMO3P69849 1222 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 MRPS6P82932 125 aaKnown RBP11.14□□□□□ -0.63
VPS11-208ENST00000621676 MAMLD1Q13495 774 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 SOWAHAQ2M3V2 549 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 FBXO47Q5MNV8 452 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 C1orf228Q6PIY5 440 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 LRRC57Q8N9N7 239 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 SLC4A11Q8NBS3 891 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 MORC4Q8TE76 937 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 TMEM176AQ96HP8 235 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 VPS18Q9P253 973 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 DNAJB4Q9UDY4 337 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 ATP8A1Q9Y2Q0 1164 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 COQ4Q9Y3A0 265 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 SCN1AP35498 2009 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 GOLGA4Q13439 2230 aaKnown RBP11.14□□□□□ -0.63
VPS11-208ENST00000621676 MYBPHLA2RUH7 354 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 GCNT1Q02742 428 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 RSRC2Q7L4I2 434 aaKnown RBP11.14□□□□□ -0.63
VPS11-208ENST00000621676 FAM131BQ86XD5 332 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 SH2D3CQ8N5H7 860 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 GPR161Q8N6U8 529 aaKnown RBP11.14□□□□□ -0.63
VPS11-208ENST00000621676 TMEM35BQ8NCS4 154 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 BEST2Q8NFU1 509 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 RAPGEF5Q92565 580 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 HVCN1Q96D96 273 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 L1RE1Q9UN81 338 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 CCDC78A2IDD5 438 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 PGRMC1O00264 195 aaKnown RBP11.14□□□□□ -0.63
VPS11-208ENST00000621676 KRT1P04264 644 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 SPATA31D3P0C874 917 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 GNAT1P11488 350 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 PDGFRAP16234 1089 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 CYP3A5P20815 502 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 ATP1A2P50993 1020 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 LIN9Q5TKA1 542 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 NPNTQ6UXI9 565 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 C15orf39Q6ZRI6 1047 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 SPATA31D4Q6ZUB0 917 aa11.14□□□□□ -0.63
VPS11-208ENST00000621676 TSPYL2Q9H2G4 693 aaPredicted RBP11.14□□□□□ -0.63
VPS11-208ENST00000621676 LCTP09848 1927 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 ARL5CA6NH57 179 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 MCF2P10911 925 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 HPDP32754 393 aaPredicted RBP11.13□□□□□ -0.63
VPS11-208ENST00000621676 SGO2Q562F6 1265 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 C10orf76Q5T2E6 689 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 SEL1L2Q5TEA6 688 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 RSPH3Q86UC2 560 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 ANKRD7Q92527 254 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 NT5C1AQ9BXI3 368 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 SIK2Q9H0K1 926 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 HESX1Q9UBX0 185 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 SLC27A5Q9Y2P5 690 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 SNX10Q9Y5X0 201 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 STYXL1Q9Y6J8 313 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 SPTBN5Q9NRC6 3674 aaKnown RBP11.13□□□□□ -0.63
VPS11-208ENST00000621676 TRIOBPQ9H2D6 2365 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 PTGESO14684 152 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 MOCS2O96007 188 aaPredicted RBP11.13□□□□□ -0.63
VPS11-208ENST00000621676 HMBSP08397 361 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 CKAP4Q07065 602 aaKnown RBP11.13□□□□□ -0.63
VPS11-208ENST00000621676 IFI16Q16666 785 aaKnown RBP11.13□□□□□ -0.63
VPS11-208ENST00000621676 KDELC2Q7Z4H8 507 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 USP38Q8NB14 1042 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 APPL2Q8NEU8 664 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 WHAMMQ8TF30 809 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 USP6NLQ92738 828 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 DDX43Q9NXZ2 648 aaKnown RBP11.13□□□□□ -0.63
VPS11-208ENST00000621676 DDX20Q9UHI6 824 aaKnown RBP11.13□□□□□ -0.63
VPS11-208ENST00000621676 ZNF148Q9UQR1 794 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 SLC45A1Q9Y2W3 748 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 PCDHGC5Q9Y5F6 944 aa11.13□□□□□ -0.63
VPS11-208ENST00000621676 B4GALT3O60512 393 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 BANF1O75531 89 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 THP07101 528 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 BDNFP23560 247 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 GTF2F1P35269 517 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS11-208ENST00000621676 LILRA4P59901 499 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 MYBPC2Q14324 1141 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 DCAF6Q58WW2 860 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 ZC3H12AQ5D1E8 599 aaKnown RBP11.12□□□□□ -0.63
VPS11-208ENST00000621676 C9orf57Q5W0N0 161 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 MFSD7Q6UXD7 560 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 AGMOQ6ZNB7 445 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 ABI1Q8IZP0 508 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms