RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 KAZNQ674X7 775 aa22.48■■□□□ 1.19
LIME1-210ENST00000621325 MAIP1Q8WWC4 291 aa22.48■■□□□ 1.19
LIME1-210ENST00000621325 DNAJB3Q8WWF6 145 aa22.48■■□□□ 1.19
LIME1-210ENST00000621325 ART4Q93070 314 aa22.48■■□□□ 1.19
LIME1-210ENST00000621325 HEXIM2Q96MH2 286 aaKnown RBP22.48■■□□□ 1.19
LIME1-210ENST00000621325 CYP3A43Q9HB55 503 aa22.48■■□□□ 1.19
LIME1-210ENST00000621325 SHOX2O60902 331 aaPredicted RBP22.47■■□□□ 1.19
LIME1-210ENST00000621325 KRT1P04264 644 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 MYZAPP0CAP1 466 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 NDST1P52848 882 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 PSMC1P62191 440 aaKnown RBP22.47■■□□□ 1.19
LIME1-210ENST00000621325 MFSD7Q6UXD7 560 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 LRRC31Q6UY01 552 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 EMC1Q8N766 993 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 UBA3Q8TBC4 463 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 TMEM40Q8WWA1 233 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 CCDC114Q96M63 670 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.47■■□□□ 1.19
LIME1-210ENST00000621325 MBLAC1A4D2B0 266 aaPredicted RBP22.47■■□□□ 1.19
LIME1-210ENST00000621325 M0QYV0 167 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 SHBGP04278 402 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 GSCP56915 257 aaPredicted RBP22.47■■□□□ 1.19
LIME1-210ENST00000621325 GLRA4Q5JXX5 417 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 RAPGEF5Q92565 580 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 FAXDC2Q96IV6 333 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 SLITRK1Q96PX8 696 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 SEMA4AQ9H3S1 761 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 ASIC3Q9UHC3 531 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 STRIP2Q9ULQ0 834 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 ZNF236Q9UL36 1845 aa22.47■■□□□ 1.19
LIME1-210ENST00000621325 KRT3P12035 628 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 P4HA1P13674 534 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 CYP3A5P20815 502 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 PPARDQ03181 441 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 DCAF4L1Q3SXM0 396 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 SLC27A1Q6PCB7 646 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 CCDC91Q7Z6B0 441 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 XYLT1Q86Y38 959 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 ARFGAP1Q8N6T3 406 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 CAPS2Q9BXY5 557 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 NXF3Q9H4D5 531 aaKnown RBP22.46■■□□□ 1.19
LIME1-210ENST00000621325 TUBGCP4Q9UGJ1 667 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 GOLGA6L10A6NI86 522 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 TREHO43280 583 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 ATF7P17544 494 aaPredicted RBP22.46■■□□□ 1.19
LIME1-210ENST00000621325 IVDP26440 423 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 VPS41P49754 854 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 PIGHQ14442 188 aaPredicted RBP22.46■■□□□ 1.19
LIME1-210ENST00000621325 SKIDA1Q1XH10 827 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 LEKR1Q6ZMV7 388 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 PRUNE1Q86TP1 453 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 C18orf25Q96B23 403 aaPredicted RBP22.46■■□□□ 1.19
LIME1-210ENST00000621325 PABPC3Q9H361 631 aaKnown RBP22.46■■□□□ 1.19
LIME1-210ENST00000621325 SYNCQ9H7C4 482 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 PARP2Q9UGN5 583 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 GJD2Q9UKL4 321 aa22.46■■□□□ 1.19
LIME1-210ENST00000621325 BARX2Q9UMQ3 279 aaPredicted RBP22.46■■□□□ 1.19
LIME1-210ENST00000621325 SCN1AP35498 2009 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 SMIM35A0A1B0GVV1 85 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 SIGLEC16A6NMB1 481 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 MYL3P08590 195 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 DARSP14868 501 aaKnown RBP22.45■■□□□ 1.18
LIME1-210ENST00000621325 PSMA2P25787 234 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 IRAK1P51617 712 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 TAP1Q03518 808 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 RCOR2Q8IZ40 523 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 C12orf29Q8N999 325 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 USP6NLQ92738 828 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 APOL6Q9BWW8 343 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 METTL5Q9NRN9 209 aaKnown RBP22.45■■□□□ 1.18
LIME1-210ENST00000621325 MTRF1LQ9UGC7 380 aaKnown RBP22.45■■□□□ 1.18
LIME1-210ENST00000621325 HMGB1P1B2RPK0 211 aaPredicted RBP22.45■■□□□ 1.18
LIME1-210ENST00000621325 PIK3R2O00459 728 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 NR1D1P20393 614 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 GBP1P32455 592 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 GPD2P43304 727 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 PSEN2P49810 448 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 INCA1Q0VD86 236 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 FOXR1Q6PIV2 292 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 NIPA2Q8N8Q9 360 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 ATL2Q8NHH9 583 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 SNX27Q96L92 541 aa22.45■■□□□ 1.18
LIME1-210ENST00000621325 AKAP5P24588 427 aa22.44■■□□□ 1.18
LIME1-210ENST00000621325 GNGT1P63211 74 aa22.44■■□□□ 1.18
LIME1-210ENST00000621325 ADAM17P78536 824 aa22.44■■□□□ 1.18
LIME1-210ENST00000621325 SKOR1P84550 965 aa22.44■■□□□ 1.18
LIME1-210ENST00000621325 PDCLQ13371 301 aa22.44■■□□□ 1.18
LIME1-210ENST00000621325 PTK6Q13882 451 aa22.44■■□□□ 1.18
LIME1-210ENST00000621325 CCNG2Q16589 344 aa22.44■■□□□ 1.18
LIME1-210ENST00000621325 LRRC38Q5VT99 294 aa22.44■■□□□ 1.18
LIME1-210ENST00000621325 NEU2Q9Y3R4 380 aa22.44■■□□□ 1.18
LIME1-210ENST00000621325 TRIP12Q14669 1992 aaPredicted RBP22.44■■□□□ 1.18
LIME1-210ENST00000621325 DCDC2CA8MYV0 355 aa22.43■■□□□ 1.18
LIME1-210ENST00000621325 VDRP11473 427 aa22.43■■□□□ 1.18
LIME1-210ENST00000621325 HPDP32754 393 aaPredicted RBP22.43■■□□□ 1.18
LIME1-210ENST00000621325 CALCOCO2Q13137 446 aa22.43■■□□□ 1.18
LIME1-210ENST00000621325 CNGA2Q16280 664 aa22.43■■□□□ 1.18
LIME1-210ENST00000621325 SMTNL2Q2TAL5 461 aa22.43■■□□□ 1.18
LIME1-210ENST00000621325 KRT71Q3SY84 523 aa22.43■■□□□ 1.18
LIME1-210ENST00000621325 C17orf99Q6UX52 265 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms