RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 SPECC1L-ADORA2AF8WAN1 911 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 NRG2O14511 850 aaPredicted RBP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 SPTLC2O15270 562 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 EIF3DO15371 548 aaKnown RBP eCLIP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 FOXD2O60548 495 aaPredicted RBP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 LRP3O75074 770 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 TNNC2P02585 160 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 HOXA6P31267 233 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 CTHP32929 405 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 PDE6CP51160 858 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 LMNB2Q03252 620 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 BFSP1Q12934 665 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 ZNF268Q14587 947 aaPredicted RBP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 DUOXA2Q1HG44 320 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 ITPRIPL2Q3MIP1 535 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 CFAP221Q4G0U5 840 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 C4orf50Q6ZRC1 276 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 TMEM130Q8N3G9 435 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 PDCL2Q8N4E4 241 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 CSGALNACT2Q8N6G5 542 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 C1orf127Q8N9H9 656 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 IQUBQ8NA54 791 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 LINC00301Q8NCQ3 95 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 SAAL1Q96ER3 474 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 TRMT2BQ96GJ1 504 aaKnown RBP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 LPIN3Q9BQK8 851 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 IL21Q9HBE4 155 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 DDX43Q9NXZ2 648 aaKnown RBP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 EHD2Q9NZN4 543 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 COL4A3Q01955 1670 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 PRPF40AO75400 957 aaKnown RBP12.8□□□□□ -0.36
UPF3B-204ENST00000619445 SOAT2O75908 522 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 YEATS4O95619 227 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 KRT19P08727 400 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 TDGF1P13385 188 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 NLRP12P59046 1061 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 KCNA1Q09470 495 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 INTS6LQ5JSJ4 861 aaKnown RBP12.8□□□□□ -0.36
UPF3B-204ENST00000619445 STXBP5Q5T5C0 1151 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 LAIR1Q6GTX8 287 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 CC2D1AQ6P1N0 951 aaPredicted RBP12.8□□□□□ -0.36
UPF3B-204ENST00000619445 FAM173BQ6P4H8 233 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 CNNM4Q6P4Q7 775 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 DGLUCYQ7Z3D6 616 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 LRRTM3Q86VH5 581 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 MON1AQ86VX9 555 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 ADGRF2Q8IZF7 708 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 FSIP1Q8NA03 581 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 RSPRY1Q96DX4 576 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 TDP1Q9NUW8 608 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 INTS13Q9NVM9 706 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 KBTBD4Q9NVX7 518 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 CGNQ9P2M7 1197 aaKnown RBP12.8□□□□□ -0.36
UPF3B-204ENST00000619445 L1RE1Q9UN81 338 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 DMXL1Q9Y485 3027 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 UBE4BO95155 1302 aa12.8□□□□□ -0.36
UPF3B-204ENST00000619445 KIF26AQ9ULI4 1882 aaPredicted RBP12.79□□□□□ -0.36
UPF3B-204ENST00000619445 CUTAO60888 179 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 ATG13O75143 517 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 PRAMEF12O95522 483 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 F11P03951 625 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 FAM163BP0C2L3 166 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 PFKLP17858 780 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 MAGEA11P43364 429 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 CASP5P51878 434 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 CYP4F8P98187 520 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 PDGFRLQ15198 375 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 ATL3Q6DD88 541 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 VSTM1Q6UX27 236 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 SPATA2LQ8IUW3 424 aaPredicted RBP12.79□□□□□ -0.36
UPF3B-204ENST00000619445 WDR49Q8IV35 697 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 PDILTQ8N807 584 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 CCDC26Q8TAB7 109 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 GIPC2Q8TF65 315 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 RMDN1Q96DB5 314 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 MYRFLQ96LU7 910 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 CBWD1Q9BRT8 395 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 SLC46A2Q9BY10 475 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 PANK2Q9BZ23 570 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 TRIM9Q9C026 710 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 DLL3Q9NYJ7 618 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 SNX9Q9Y5X1 595 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 NCANO14594 1321 aa12.79□□□□□ -0.36
UPF3B-204ENST00000619445 SPAG17Q6Q759 2223 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 TULP1O00294 542 aaPredicted RBP12.78□□□□□ -0.36
UPF3B-204ENST00000619445 GABRDO14764 452 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 NOL4O94818 638 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 PRPF6O94906 941 aaKnown RBP12.78□□□□□ -0.36
UPF3B-204ENST00000619445 HMGA1P17096 107 aaKnown RBP12.78□□□□□ -0.36
UPF3B-204ENST00000619445 ASIC1P78348 528 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 GRSF1Q12849 480 aaKnown RBP eCLIP12.78□□□□□ -0.36
UPF3B-204ENST00000619445 CCINQ13939 588 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 TSSK4Q6SA08 328 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 HS2ST1Q7LGA3 356 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 LONP2Q86WA8 852 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 MAB21L3Q8N8X9 362 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 NOC3LQ8WTT2 800 aaKnown RBP12.78□□□□□ -0.36
UPF3B-204ENST00000619445 HPDLQ96IR7 371 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 FAM83CQ9BQN1 747 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 PI4K2AQ9BTU6 479 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms