RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 HTR4Q13639 388 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 CCDC142Q17RM4 750 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 PRSS36Q5K4E3 855 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 LRRTM3Q86VH5 581 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 FAM186BQ8IYM0 893 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 SPATA20Q8TB22 786 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 SPPL2BQ8TCT7 592 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 C2orf15Q8WU43 125 aaKnown RBP17.13■□□□□ 0.33
BRCA1-228ENST00000618469 KBTBD7Q8WVZ9 684 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 SYAP1Q96A49 352 aaPredicted RBP17.13■□□□□ 0.33
BRCA1-228ENST00000618469 TCEAL4Q96EI5 215 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 ACBD6Q9BR61 282 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 DNAJC25Q9H1X3 360 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 TBC1D17Q9HA65 648 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 AVENQ9NQS1 362 aaPredicted RBP17.13■□□□□ 0.33
BRCA1-228ENST00000618469 TMLHEQ9NVH6 421 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 NUMBLQ9Y6R0 609 aa17.13■□□□□ 0.33
BRCA1-228ENST00000618469 CACNA1IQ9P0X4 2223 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 TRIM49P0CI25 452 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 TRIM49CP0CI26 452 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 PCSK1P29120 753 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 CCR2P41597 374 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 LHX1P48742 406 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 UBE2HP62256 183 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 CLDN10P78369 228 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 SMARCB1Q12824 385 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 NCOA4Q13772 614 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 ZNF699Q32M78 642 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 EDRF1Q3B7T1 1238 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 WDR72Q3MJ13 1102 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 CYP4A22Q5TCH4 519 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 DPH6Q7L8W6 267 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 LEMD2Q8NC56 503 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 FAM200AQ8TCP9 573 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 TMC2Q8TDI7 906 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 LPIN3Q9BQK8 851 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 SYT15Q9BQS2 421 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 HSFX1Q9UBD0 423 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 PCDHB5Q9Y5E4 795 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 COL4A3Q01955 1670 aa17.12■□□□□ 0.33
BRCA1-228ENST00000618469 ANHXE9PGG2 379 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 ZNF197O14709 1029 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 GABRDO14764 452 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 MAPK13O15264 365 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 LRRN2O75325 713 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 STAU1O95793 577 aaKnown RBP17.11■□□□□ 0.33
BRCA1-228ENST00000618469 KRT13P13646 458 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 ATF6P18850 670 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 WARSP23381 471 aaKnown RBP17.11■□□□□ 0.33
BRCA1-228ENST00000618469 ATICP31939 592 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 VAMP7P51809 220 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 PSMC1P62191 440 aaKnown RBP17.11■□□□□ 0.33
BRCA1-228ENST00000618469 ADAM9Q13443 819 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 VEPH1Q14D04 833 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 NFE2Q16621 373 aaPredicted RBP17.11■□□□□ 0.33
BRCA1-228ENST00000618469 COBLL1Q53SF7 1204 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 ISM2Q6H9L7 571 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 PARM1Q6UWI2 310 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 SCARA5Q6ZMJ2 495 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 INTS8Q75QN2 995 aaKnown RBP17.11■□□□□ 0.33
BRCA1-228ENST00000618469 MTSS1LQ765P7 747 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 LIMS2Q7Z4I7 341 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 ELOA2Q8IYF1 753 aaPredicted RBP17.11■□□□□ 0.33
BRCA1-228ENST00000618469 FGF14Q92915 247 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 MCRS1Q96EZ8 462 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 EEF2KMTQ96G04 330 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 TSG101Q99816 390 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 PI4K2AQ9BTU6 479 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 XYLT2Q9H1B5 865 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 NXF1Q9UBU9 619 aaKnown RBP17.11■□□□□ 0.33
BRCA1-228ENST00000618469 MAN1B1Q9UKM7 699 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 FANCMQ8IYD8 2048 aa17.11■□□□□ 0.33
BRCA1-228ENST00000618469 TRIM49BA6NDI0 452 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 NRG2O14511 850 aaPredicted RBP17.1■□□□□ 0.33
BRCA1-228ENST00000618469 VNN1O95497 513 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 C4BPAP04003 597 aaKnown RBP17.1■□□□□ 0.33
BRCA1-228ENST00000618469 HAPLN1P10915 354 aaPredicted RBP17.1■□□□□ 0.33
BRCA1-228ENST00000618469 GJA1P17302 382 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 PSMC2P35998 433 aaKnown RBP17.1■□□□□ 0.33
BRCA1-228ENST00000618469 PIK3CAP42336 1068 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 TUFMP49411 452 aaKnown RBP17.1■□□□□ 0.33
BRCA1-228ENST00000618469 EPHA5P54756 1037 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 STIM1Q13586 685 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 ZACNQ401N2 412 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 C1orf220Q5T0J3 134 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 ITIH5Q86UX2 942 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 TMC8Q8IU68 726 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 SLC44A3Q8N4M1 653 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 GPR152Q8TDT2 470 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 PSMG2Q969U7 264 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 NXPE3Q969Y0 559 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 ELMO3Q96BJ8 720 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 PKMYT1Q99640 499 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 KXD1Q9BQD3 176 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 MRPL45Q9BRJ2 306 aaKnown RBP17.1■□□□□ 0.33
BRCA1-228ENST00000618469 GTPBP4Q9BZE4 634 aaKnown RBP17.1■□□□□ 0.33
BRCA1-228ENST00000618469 SNX25Q9H3E2 840 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 SMYD3Q9H7B4 428 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 MMRN2Q9H8L6 949 aa17.1■□□□□ 0.33
BRCA1-228ENST00000618469 GDE1Q9NZC3 331 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms