RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 CYTH2Q99418 400 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 CDC42EP4Q9H3Q1 356 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 PIH1D1Q9NWS0 290 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 SAE1Q9UBE0 346 aaPredicted RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 SIPA1L3O60292 1781 aaPredicted RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 B4GALT5O43286 388 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 ESRRAP11474 423 aaPredicted RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 NCKAP1LP55160 1127 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 C11orf63Q6NUN7 778 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 PLEKHH3Q7Z736 793 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 LRRC34Q8IZ02 419 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 ABRAQ8N0Z2 381 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 DNAJB3Q8WWF6 145 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 SEMA4DQ92854 862 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 FGFR1OP2Q9NVK5 253 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 CTNNAL1Q9UBT7 734 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 STAP1Q9ULZ2 295 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 TIMM13Q9Y5L4 95 aaPredicted RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 IGLV3-22A0A075B6J6 115 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 CCDC130P13994 396 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 MAP2K2P36507 400 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 MAP3K7CLP57077 242 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 RPS6KA2Q15349 733 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 PDCD7Q8N8D1 485 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 TRIM55Q9BYV6 548 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 CEP41Q9BYV8 373 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 DCLK3Q9C098 648 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 CHST7Q9NS84 486 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 TLR2O60603 784 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 BANF1O75531 89 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 IRF1P10914 325 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 SLC8A1P32418 973 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 GTF2BQ00403 316 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 AMPD2Q01433 879 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 HABP4Q5JVS0 413 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 ZBTB41Q5SVQ8 909 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 BTBD8Q5XKL5 378 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 TMEM176AQ96HP8 235 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 FHDC1Q9C0D6 1143 aaPredicted RBP9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 CCDC68Q9H2F9 335 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 SEMA4AQ9H3S1 761 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 PDGFCQ9NRA1 345 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 GPRC5DQ9NZD1 345 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 ZC3H7BQ9UGR2 993 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 CPSF3Q9UKF6 684 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 NKRFO15226 690 aaKnown RBP eCLIP9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 PROSCO94903 275 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 CPB1P15086 417 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 PTENP60484 403 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 TSTA3Q13630 321 aaPredicted RBP9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 PCSK7Q16549 785 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 SV2CQ496J9 727 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 ZNF484Q5JVG2 852 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 LVRNQ6Q4G3 990 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 BZW1Q7L1Q6 419 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 FBXO36Q8NEA4 188 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 FAM172AQ8WUF8 416 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 PSMC3IPQ9P2W1 217 aaPredicted RBP9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 PPP2R3BQ9Y5P8 575 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 CFAP69A5D8W1 941 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 ZSCAN5DPP0CG00 497 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 FAM182AQ5T1J6 154 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 PARP9Q8IXQ6 854 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 CLEC4DQ8WXI8 215 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 TNIP3Q96KP6 325 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 PWWP2AQ96N64 755 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 PRDM5Q9NQX1 630 aaPredicted RBP9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 USP54Q70EL1 1684 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 MYH7P12883 1935 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 AHDC1Q5TGY3 1603 aaPredicted RBP9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 SH3BP5O60239 455 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 YY1P25490 414 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 BEX3Q00994 111 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 COBLL1Q53SF7 1204 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 VSIG10LQ86VR7 867 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 TRIM42Q8IWZ5 723 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 EPS8L1Q8TE68 723 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 PORCNQ9H237 461 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 UBN1Q9NPG3 1134 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 USP18Q9UMW8 372 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 NCAM1P13591 858 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 ACAT1P24752 427 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 THPOP40225 353 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 FNTAP49354 379 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 CPT1AP50416 773 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 NDST1P52848 882 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 OAZ1P54368 228 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 DEUP1Q05D60 604 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 DCAF4L1Q3SXM0 396 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 HGSNATQ68CP4 663 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 NPNTQ6UXI9 565 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 SLC25A41Q8N5S1 370 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 REPS2Q8NFH8 660 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 PCDHB18PQ96TA0 734 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 TAF1P21675 1872 aa9.35□□□□□ -0.91
PDLIM5-222ENST00000615540 DCTN3O75935 186 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 NFICP08651 508 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 CALRP27797 417 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 AVPR1AP37288 418 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 GCLCP48506 637 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms