RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CNOT8Q9UFF9 292 aaKnown RBP15.14■□□□□ 0.01
USP39-220ENST00000613444 TSPAN16Q9UKR8 245 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 JRKLQ9Y4A0 524 aa15.14■□□□□ 0.01
USP39-220ENST00000613444 CYP11A1P05108 521 aa15.13■□□□□ 0.01
USP39-220ENST00000613444 MYBL1P10243 752 aa15.13■□□□□ 0.01
USP39-220ENST00000613444 PAX3P23760 479 aa15.13■□□□□ 0.01
USP39-220ENST00000613444 PAPD7Q5XG87 772 aaKnown RBP15.13■□□□□ 0.01
USP39-220ENST00000613444 PPP1R2P3Q6NXS1 205 aa15.13■□□□□ 0.01
USP39-220ENST00000613444 DSTYKQ6XUX3 929 aa15.13■□□□□ 0.01
USP39-220ENST00000613444 RSPH1Q8WYR4 309 aa15.13■□□□□ 0.01
USP39-220ENST00000613444 SUSD3Q96L08 255 aa15.13■□□□□ 0.01
USP39-220ENST00000613444 GOLPH3Q9H4A6 298 aa15.13■□□□□ 0.01
USP39-220ENST00000613444 FAM49BQ9NUQ9 324 aa15.13■□□□□ 0.01
USP39-220ENST00000613444 HCSTQ9UBK5 93 aa15.13■□□□□ 0.01
USP39-220ENST00000613444 LRFN2Q9ULH4 789 aa15.13■□□□□ 0.01
USP39-220ENST00000613444 TIMM13Q9Y5L4 95 aaPredicted RBP15.13■□□□□ 0.01
USP39-220ENST00000613444 LAMA2P24043 3122 aaKnown RBP15.13■□□□□ 0.01
USP39-220ENST00000613444 TCRBV5S1A1TA0A578 114 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 HOXA2O43364 376 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 BUB1BO60566 1050 aaPredicted RBP15.12■□□□□ 0.01
USP39-220ENST00000613444 STILQ15468 1287 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 IFI16Q16666 785 aaKnown RBP15.12■□□□□ 0.01
USP39-220ENST00000613444 PTPN20Q4JDL3 420 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 TTC30AQ86WT1 665 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 ABI1Q8IZP0 508 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 TRIM11Q96F44 468 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 RTP3Q9BQQ7 232 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 TLR10Q9BXR5 811 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 ABCB6Q9NP58 842 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 PTPRDP23468 1912 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 M0QYV0 167 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 ATP2C2O75185 946 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 RAG1P15918 1043 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 RNASELQ05823 741 aaKnown RBP15.12■□□□□ 0.01
USP39-220ENST00000613444 CCDC142Q17RM4 750 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 PLEKHA7Q6IQ23 1121 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 B3GALNT2Q8NCR0 500 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 UBA3Q8TBC4 463 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 NUP85Q9BW27 656 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 DDX43Q9NXZ2 648 aaKnown RBP15.12■□□□□ 0.01
USP39-220ENST00000613444 CTTNBP2NLQ9P2B4 639 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 UVRAGQ9P2Y5 699 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 TJP2Q9UDY2 1190 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 CEP83Q9Y592 693 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 NLRC5Q86WI3 1866 aa15.12■□□□□ 0.01
USP39-220ENST00000613444 ABHD14A-ACY1A0A1B0GW23 586 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 URI1O94763 535 aaPredicted RBP15.11■□□□□ 0.01
USP39-220ENST00000613444 ODC1P11926 461 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 ACAT1P24752 427 aaKnown RBP15.11■□□□□ 0.01
USP39-220ENST00000613444 LHX1P48742 406 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 GOLGA7BQ2TAP0 167 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 MEI1Q5TIA1 1274 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 SPATA18Q8TC71 538 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 TNIP3Q96KP6 325 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 CPXM1Q96SM3 734 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 MRFAP1Q9Y605 127 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 RIOK3O14730 519 aaKnown RBP15.11■□□□□ 0.01
USP39-220ENST00000613444 NCK2O43639 380 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 DGKIO75912 1065 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 FTCDO95954 541 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 CCDC130P13994 396 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 TKTP29401 623 aaKnown RBP15.11■□□□□ 0.01
USP39-220ENST00000613444 OR1G1P47890 313 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 PSMC1P62191 440 aaKnown RBP15.11■□□□□ 0.01
USP39-220ENST00000613444 PDCLQ13371 301 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 MAMLD1Q13495 774 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 PHLDB2Q86SQ0 1253 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 ERICH1Q86X53 443 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 ZNF564Q8TBZ8 553 aaPredicted RBP15.11■□□□□ 0.01
USP39-220ENST00000613444 CALR3Q96L12 384 aaKnown RBP15.11■□□□□ 0.01
USP39-220ENST00000613444 CRTAC1Q9NQ79 661 aa15.11■□□□□ 0.01
USP39-220ENST00000613444 TBKBP1A7MCY6 615 aa15.1■□□□□ 0.01
USP39-220ENST00000613444 NRP1O14786 923 aa15.1■□□□□ 0.01
USP39-220ENST00000613444 CALB1P05937 261 aa15.1■□□□□ 0.01
USP39-220ENST00000613444 PTPN1P18031 435 aaKnown RBP15.1■□□□□ 0.01
USP39-220ENST00000613444 PAQR9Q6ZVX9 377 aa15.1■□□□□ 0.01
USP39-220ENST00000613444 NT5DC3Q86UY8 548 aa15.1■□□□□ 0.01
USP39-220ENST00000613444 TMEM199Q8N511 208 aa15.1■□□□□ 0.01
USP39-220ENST00000613444 SLC35F5Q8WV83 523 aa15.1■□□□□ 0.01
USP39-220ENST00000613444 TOP1MTQ969P6 601 aa15.1■□□□□ 0.01
USP39-220ENST00000613444 FAM193BQ96PV7 902 aaPredicted RBP15.1■□□□□ 0.01
USP39-220ENST00000613444 MRPL9Q9BYD2 267 aaKnown RBP15.1■□□□□ 0.01
USP39-220ENST00000613444 TRIM7Q9C029 511 aa15.1■□□□□ 0.01
USP39-220ENST00000613444 RNF216Q9NWF9 866 aaPredicted RBP15.1■□□□□ 0.01
USP39-220ENST00000613444 MARCH5Q9NX47 278 aa15.1■□□□□ 0.01
USP39-220ENST00000613444 PRG3Q9Y2Y8 225 aaPredicted RBP15.1■□□□□ 0.01
USP39-220ENST00000613444 TULP2O00295 520 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 TYMPP19971 482 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 GABRB2P47870 512 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 SLC11A1P49279 550 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 GSCP56915 257 aaPredicted RBP15.09■□□□□ 0.01
USP39-220ENST00000613444 PPP1R15BQ5SWA1 713 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 LIN9Q5TKA1 542 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 C11orf63Q6NUN7 778 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 DAAM2Q86T65 1068 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 FUKQ8N0W3 1084 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 ANKRD52Q8NB46 1076 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 SLC2A14Q8TDB8 520 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 BTBD6Q96KE9 485 aa15.09■□□□□ 0.01
USP39-220ENST00000613444 HNRNPABQ99729 332 aaKnown RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms