RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ELMOD1Q8N336 334 aa16.26■□□□□ 0.19
LIG1-219ENST00000600055 ST13P5Q8NFI4 369 aaPredicted RBP16.26■□□□□ 0.19
LIG1-219ENST00000600055 SPPL2BQ8TCT7 592 aa16.26■□□□□ 0.19
LIG1-219ENST00000600055 C2orf15Q8WU43 125 aaKnown RBP16.26■□□□□ 0.19
LIG1-219ENST00000600055 ING5Q8WYH8 240 aa16.26■□□□□ 0.19
LIG1-219ENST00000600055 ACSF2Q96CM8 615 aaPredicted RBP16.26■□□□□ 0.19
LIG1-219ENST00000600055 TCEAL4Q96EI5 215 aa16.26■□□□□ 0.19
LIG1-219ENST00000600055 ZNF512Q96ME7 567 aaPredicted RBP16.26■□□□□ 0.19
LIG1-219ENST00000600055 DENND4AQ7Z401 1863 aa16.26■□□□□ 0.19
LIG1-219ENST00000600055 A8MXQ7 604 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 MBD3O95983 291 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 ASGR2P07307 311 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 ATF6P18850 670 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 CCR2P41597 374 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 TUFMP49411 452 aaKnown RBP16.25■□□□□ 0.19
LIG1-219ENST00000600055 EPHB3P54753 998 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 PLD1Q13393 1074 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 ORC1Q13415 861 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 NFE2Q16621 373 aaPredicted RBP16.25■□□□□ 0.19
LIG1-219ENST00000600055 MDH1BQ5I0G3 518 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 SDHAF4Q5VUM1 108 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 IQCEQ6IPM2 695 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 POTEHQ6S545 545 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 RBM43Q6ZSC3 357 aaKnown RBP16.25■□□□□ 0.19
LIG1-219ENST00000600055 SPATA2LQ8IUW3 424 aaPredicted RBP16.25■□□□□ 0.19
LIG1-219ENST00000600055 ZDHHC14Q8IZN3 488 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 STKLD1Q8NE28 680 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 FBXL13Q8NEE6 735 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 GPR152Q8TDT2 470 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 GIPC2Q8TF65 315 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 MYLPFQ96A32 169 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 IMPG2Q9BZV3 1241 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 EPHX3Q9H6B9 360 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 RAB20Q9NX57 234 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 HSFX1Q9UBD0 423 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 HMGXB4Q9UGU5 601 aa16.25■□□□□ 0.19
LIG1-219ENST00000600055 MYL4P12829 197 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 P4HA1P13674 534 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 GJA1P17302 382 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 CEBPBP17676 345 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 PTPN1P18031 435 aaKnown RBP16.24■□□□□ 0.19
LIG1-219ENST00000600055 PRSS36Q5K4E3 855 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 DNAJB7Q7Z6W7 309 aaPredicted RBP16.24■□□□□ 0.19
LIG1-219ENST00000600055 PLCD3Q8N3E9 789 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 MYCBPAPQ8TBZ2 947 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 FAM200AQ8TCP9 573 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 FGF13Q92913 245 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 TATDN2Q93075 761 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 LRRC3Q9BY71 257 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 BCO2Q9BYV7 579 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 ZNF334Q9HCZ1 680 aaPredicted RBP16.24■□□□□ 0.19
LIG1-219ENST00000600055 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.24■□□□□ 0.196e-7■■■■□ 24.2
LIG1-219ENST00000600055 MRPS23Q9Y3D9 190 aaKnown RBP16.24■□□□□ 0.19
LIG1-219ENST00000600055 DOCK6Q96HP0 2047 aa16.24■□□□□ 0.19
LIG1-219ENST00000600055 MOSPD3O75425 235 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 FGFR1OPO95684 399 aaKnown RBP16.23■□□□□ 0.19
LIG1-219ENST00000600055 GNA14O95837 355 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 LAMP2P13473 410 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 FMO5P49326 533 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 NDST1P52848 882 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 MARSP56192 900 aaKnown RBP16.23■□□□□ 0.19
LIG1-219ENST00000600055 CYP27A1Q02318 531 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 DDR2Q16832 855 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 PDZD4Q76G19 769 aaPredicted RBP16.23■□□□□ 0.19
LIG1-219ENST00000600055 TMC8Q8IU68 726 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 IRF2BP1Q8IU81 584 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 CREBRFQ8IUR6 639 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 TRIM59Q8IWR1 403 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 NPAS3Q8IXF0 933 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 CCDC150Q8NCX0 1101 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 RSAD2Q8WXG1 361 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 PSMG2Q969U7 264 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 MCRS1Q96EZ8 462 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 PCED1BQ96HM7 432 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 NIF3L1Q9GZT8 377 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 ABCB6Q9NP58 842 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 AVENQ9NQS1 362 aaPredicted RBP16.23■□□□□ 0.19
LIG1-219ENST00000600055 ASAH2Q9NR71 780 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 TMEM63CQ9P1W3 806 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 EPS15L1Q9UBC2 864 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 MAGEC2Q9UBF1 373 aaPredicted RBP16.23■□□□□ 0.19
LIG1-219ENST00000600055 CDH7Q9ULB5 785 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 COQ4Q9Y3A0 265 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 NOTCH4Q99466 2003 aa16.23■□□□□ 0.19
LIG1-219ENST00000600055 PI4K2BG5E9Z4 385 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 CLDN5O00501 218 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 DCXO43602 365 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 CD58P19256 250 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 BDNFP23560 247 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 EPHA5P54756 1037 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 MTMR3Q13615 1198 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 CFAP221Q4G0U5 840 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 WDR44Q5JSH3 913 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 CCDC183Q5T5S1 534 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 CYP4A22Q5TCH4 519 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 C4orf50Q6ZRC1 276 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 ACOT1Q86TX2 421 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 SCN4BQ8IWT1 228 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 B3GALNT2Q8NCR0 500 aa16.22■□□□□ 0.19
LIG1-219ENST00000600055 FUBP3Q96I24 572 aaKnown RBP eCLIP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms