RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 TCHHQ07283 1943 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 A0A1W2PRU2 124 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 NARSO43776 548 aaKnown RBP15.13■□□□□ 0.01
LIG1-218ENST00000599322 STX10O60499 249 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 STAU1O95793 577 aaKnown RBP15.13■□□□□ 0.01
LIG1-218ENST00000599322 CST3P01034 146 aaPredicted RBP15.13■□□□□ 0.01
LIG1-218ENST00000599322 WARSP23381 471 aaKnown RBP15.13■□□□□ 0.01
LIG1-218ENST00000599322 ACAT1P24752 427 aaKnown RBP15.13■□□□□ 0.01
LIG1-218ENST00000599322 ANXA13P27216 316 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 GABRR2P28476 465 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 VAMP7P51809 220 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 NCOA4Q13772 614 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 NFIL3Q16649 462 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 SLC5A9Q2M3M2 681 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 SGSM1Q2NKQ1 1148 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 ZNF658Q5TYW1 1059 aaPredicted RBP15.13■□□□□ 0.01
LIG1-218ENST00000599322 ASTLQ6HA08 431 aaPredicted RBP15.13■□□□□ 0.01
LIG1-218ENST00000599322 LRRTM3Q86VH5 581 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 FAM186BQ8IYM0 893 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 GIPC2Q8TF65 315 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 TAF4BQ92750 862 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 SMARCD2Q92925 531 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 TCEAL4Q96EI5 215 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 FUBP3Q96I24 572 aaKnown RBP eCLIP15.13■□□□□ 0.01
LIG1-218ENST00000599322 KXD1Q9BQD3 176 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 PI4K2AQ9BTU6 479 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 BRD9Q9H8M2 597 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 SLC2A4RGQ9NR83 387 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 CA14Q9ULX7 337 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 CFAP54Q96N23 3096 aa15.13■□□□□ 0.01
LIG1-218ENST00000599322 SCN1AP35498 2009 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 LRRIQ3A6PVS8 624 aaPredicted RBP15.12■□□□□ 0.01
LIG1-218ENST00000599322 A8MXQ7 604 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 GABRDO14764 452 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 TACC1O75410 805 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 PDGFRBP09619 1106 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 EPB41P11171 864 aaKnown RBP15.12■□□□□ 0.01
LIG1-218ENST00000599322 MYL6P60660 151 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 CYP27A1Q02318 531 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 SNW1Q13573 536 aaKnown RBP15.12■□□□□ 0.01
LIG1-218ENST00000599322 TEAD2Q15562 447 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 EDRF1Q3B7T1 1238 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 SCN4BQ8IWT1 228 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 ELOA2Q8IYF1 753 aaPredicted RBP15.12■□□□□ 0.01
LIG1-218ENST00000599322 TMEM105Q8N8V8 129 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 CXorf38Q8TB03 319 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 ZSCAN18Q8TBC5 510 aaPredicted RBP15.12■□□□□ 0.01
LIG1-218ENST00000599322 GPR152Q8TDT2 470 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 DEPDC1BQ8WUY9 529 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 FAM84AQ96KN4 292 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 TRMT61BQ9BVS5 477 aaKnown RBP15.12■□□□□ 0.01
LIG1-218ENST00000599322 CRISPLD1Q9H336 500 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 ARHGEF3Q9NR81 526 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 MAGED2Q9UNF1 606 aaPredicted RBP15.12■□□□□ 0.01
LIG1-218ENST00000599322 ATP8B3O60423 1300 aa15.12■□□□□ 0.01
LIG1-218ENST00000599322 H0Y858 1186 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 PSMA7O14818 248 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 SOAT2O75908 522 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 VNN2O95498 520 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 GJA1P17302 382 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 PIK3CAP42336 1068 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 CASP4P49662 377 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 GPC5P78333 572 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 CLDN10P78369 228 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 ENPEPQ07075 957 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 CFAP221Q4G0U5 840 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 FAM78AQ5JUQ0 283 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 GPR158Q5T848 1215 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 VSTM1Q6UX27 236 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 ENGASEQ8NFI3 743 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 ST13P5Q8NFI4 369 aaPredicted RBP15.11■□□□□ 0.01
LIG1-218ENST00000599322 SHKBP1Q8TBC3 707 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 ZNF516Q92618 1163 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 MRPS31Q92665 395 aaKnown RBP15.11■□□□□ 0.01
LIG1-218ENST00000599322 IRF7Q92985 503 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 TNIP3Q96KP6 325 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 ASB16Q96NS5 453 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 LPIN3Q9BQK8 851 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 DNAJC25Q9H1X3 360 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 MRPS17Q9Y2R5 130 aaKnown RBP15.11■□□□□ 0.01
LIG1-218ENST00000599322 PCDHA5Q9Y5H7 936 aa15.11■□□□□ 0.01
LIG1-218ENST00000599322 VPS13AQ96RL7 3174 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 ZNF263O14978 683 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 C4BPAP04003 597 aaKnown RBP15.1■□□□□ 0.01
LIG1-218ENST00000599322 PSMC3P17980 439 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 CYP2F1P24903 491 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 DDX6P26196 483 aaKnown RBP eCLIP15.1■□□□□ 0.017e-10■■■□□ 19.2
LIG1-218ENST00000599322 GRIK1P39086 918 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 CCR2P41597 374 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 MAGEA11P43364 429 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 PRKCQQ04759 706 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 TDRD10Q5VZ19 366 aaKnown RBP15.1■□□□□ 0.01
LIG1-218ENST00000599322 TANGO2Q6ICL3 276 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 OSTM1Q86WC4 334 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 TTC9BQ8N6N2 239 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 MYCBPAPQ8TBZ2 947 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 CSGALNACT1Q8TDX6 532 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 CEP295NLQ96MC4 621 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 MKNK1Q9BUB5 465 aa15.1■□□□□ 0.01
LIG1-218ENST00000599322 RPP25Q9BUL9 199 aaKnown RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms