RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	EXOC7	Q9UPT5	735 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	PCDHB5	Q9Y5E4	795 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	NCOR2	Q9Y618	2525 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	OTOL1	A6NHN0	477 aa	Predicted RBP	11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	HR	O43593	1189 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	PRPF40A	O75400	957 aa	Known RBP	11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	F11	P03951	625 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	WEE1	P30291	646 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	PNPLA4	P41247	253 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	PLCB2	Q00722	1185 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	LMNB2	Q03252	620 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	SMARCB1	Q12824	385 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	CCIN	Q13939	588 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	SIM2	Q14190	667 aa	Predicted RBP	11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	DDR2	Q16832	855 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	ITPRIPL2	Q3MIP1	535 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	DGKK	Q5KSL6	1271 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	LMBRD2	Q68DH5	695 aa	Predicted RBP	11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	TXNDC8	Q6A555	127 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	TRIM68	Q6AZZ1	485 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	LAIR1	Q6GTX8	287 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	PKN3	Q6P5Z2	889 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	CCDC73	Q6ZRK6	1079 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	OSTM1	Q86WC4	334 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	NT5DC4	Q86YG4	428 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	CSGALNACT2	Q8N6G5	542 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	GPR161	Q8N6U8	529 aa	Known RBP	11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	CELF5	Q8N6W0	485 aa	Known RBP	11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	PDILT	Q8N807	584 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	GLIS3	Q8NEA6	775 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	CXorf38	Q8TB03	319 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	USP13	Q92995	863 aa	Predicted RBP	11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	CHFR	Q96EP1	664 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	USP28	Q96RU2	1077 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	MTMR12	Q9C0I1	747 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	PDE11A	Q9HCR9	933 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	HPS4	Q9NQG7	708 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	OLFML3	Q9NRN5	406 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	PANK4	Q9NVE7	773 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	THG1L	Q9NWX6	298 aa	Known RBP	11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	DDX43	Q9NXZ2	648 aa	Known RBP	11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	SIX4	Q9UIU6	781 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	CDV3	Q9UKY7	258 aa	Known RBP	11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	PCDHB13	Q9Y5F0	798 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	KIF26A	Q9ULI4	1882 aa	Predicted RBP	11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	PTPRJ	Q12913	1337 aa		11.33	□□□□□ -0.6
LSM4-205	ENST00000597776	FRMD3	A2A2Y4	597 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	EXTL3	O43909	919 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	HUS1	O60921	280 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	TADA3	O75528	432 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	PRPF6	O94906	941 aa	Known RBP	11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	PAPSS2	O95340	614 aa	Predicted RBP	11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	KRT19	P08727	400 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	ARSA	P15289	507 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	GART	P22102	1010 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	CYP2F1	P24903	491 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	AVPR1A	P37288	418 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	ATXN1	P54253	815 aa	Known RBP	11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	INTS6L	Q5JSJ4	861 aa	Known RBP	11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	LRRC52	Q8N7C0	313 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	CACTIN	Q8WUQ7	758 aa	Known RBP	11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	HPS3	Q969F9	1004 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	PKMYT1	Q99640	499 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	FAM83C	Q9BQN1	747 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	EBF3	Q9H4W6	596 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	GTF3C4	Q9UKN8	822 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	ITGA11	Q9UKX5	1188 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	MTMR6	Q9Y217	621 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	SNX9	Q9Y5X1	595 aa		11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	11.32	□□□□□ -0.6
LSM4-205	ENST00000597776	DCDC2B	A2VCK2	349 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	ATP2C2	O75185	946 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	LDHA	P00338	332 aa	Known RBP	11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	RET	P07949	1114 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	TMEM191B	P0C7N4	346 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	CSH1	P0DML2	217 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	CSH2	P0DML3	217 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	PXN	P49023	591 aa	Predicted RBP	11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	MYL7	Q01449	175 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	ALCAM	Q13740	583 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	RUNX3	Q13761	415 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	SLC39A14	Q15043	492 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	NFE2	Q16621	373 aa	Predicted RBP	11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	NAIF1	Q69YI7	327 aa	Predicted RBP	11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	FSTL4	Q6MZW2	842 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	MON1A	Q86VX9	555 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	LONP2	Q86WA8	852 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	ADGRF2	Q8IZF7	708 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	TTC16	Q8NEE8	873 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	OR5B17	Q8NGF7	314 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	LEO1	Q8WVC0	666 aa	Predicted RBP	11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	MRPS31	Q92665	395 aa	Known RBP	11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	ACBD6	Q9BR61	282 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	TRPC7	Q9HCX4	862 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	TDP1	Q9NUW8	608 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	POLR3B	Q9NW08	1133 aa	Predicted RBP	11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	GDAP2	Q9NXN4	497 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	OBSL1	O75147	1896 aa		11.31	□□□□□ -0.6
LSM4-205	ENST00000597776	PRR5-ARHGAP8	B1AHC4	643 aa		11.3	□□□□□ -0.6

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