RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 TPRP12270 2363 aaKnown RBP12.65□□□□□ -0.38
CLIP3-204ENST00000590559 TRDMT1O14717 391 aaKnown RBP12.65□□□□□ -0.38
CLIP3-204ENST00000590559 SLC30A4O14863 429 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 TADA3O75528 432 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 CASP5P51878 434 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 ZNF268Q14587 947 aaPredicted RBP12.65□□□□□ -0.38
CLIP3-204ENST00000590559 CSRP2Q16527 193 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 L1TD1Q5T7N2 865 aaKnown RBP12.65□□□□□ -0.38
CLIP3-204ENST00000590559 FSTL4Q6MZW2 842 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 DYMQ7RTS9 669 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 LIMS2Q7Z4I7 341 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 BRSK2Q8IWQ3 736 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 DCP1BQ8IZD4 617 aaKnown RBP12.65□□□□□ -0.38
CLIP3-204ENST00000590559 PDCL2Q8N4E4 241 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 C1orf127Q8N9H9 656 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 FAM200AQ8TCP9 573 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 NETO1Q8TDF5 533 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 POMGNT1Q8WZA1 660 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 TRMT2BQ96GJ1 504 aaKnown RBP12.65□□□□□ -0.38
CLIP3-204ENST00000590559 MYRFLQ96LU7 910 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 ACBD6Q9BR61 282 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 ZHX3Q9H4I2 956 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 GKN1Q9NS71 199 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 SEMA4GQ9NTN9 838 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 GDAP2Q9NXN4 497 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 CDV3Q9UKY7 258 aaKnown RBP12.65□□□□□ -0.38
CLIP3-204ENST00000590559 RAB23Q9ULC3 237 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 L1RE1Q9UN81 338 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 PCDHB5Q9Y5E4 795 aa12.65□□□□□ -0.38
CLIP3-204ENST00000590559 CCDC163A0A0D9SF12 145 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 DCDC2BA2VCK2 349 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 GABRDO14764 452 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 EXTL3O43909 919 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 NOL4O94818 638 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 GAP43P17677 238 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 GARTP22102 1010 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 PNPLA4P41247 253 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 GPR15P49685 360 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 RUNX3Q13761 415 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 PRR23CQ6ZRP0 262 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 PRR23BQ6ZRT6 265 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 MON1AQ86VX9 555 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 FAM160A2Q8N612 972 aaPredicted RBP12.64□□□□□ -0.39
CLIP3-204ENST00000590559 LRRC52Q8N7C0 313 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 MAB21L3Q8N8X9 362 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 SPATA18Q8TC71 538 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 ZNF560Q96MR9 790 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 CNTNAP3BQ96NU0 1288 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 FGFBP2Q9BYJ0 223 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 CNTNAP3Q9BZ76 1288 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 KIF9Q9HAQ2 790 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 FBRSL1Q9HCM7 1045 aaKnown RBP12.64□□□□□ -0.39
CLIP3-204ENST00000590559 ABCB6Q9NP58 842 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 TDP1Q9NUW8 608 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 THG1LQ9NWX6 298 aaKnown RBP12.64□□□□□ -0.39
CLIP3-204ENST00000590559 ABI2Q9NYB9 513 aaPredicted RBP12.64□□□□□ -0.39
CLIP3-204ENST00000590559 SIX4Q9UIU6 781 aa12.64□□□□□ -0.39
CLIP3-204ENST00000590559 ZZEF1O43149 2961 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 A0A087X0B3 334 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 LDHAP00338 332 aaKnown RBP12.63□□□□□ -0.39
CLIP3-204ENST00000590559 ITGB3P05106 788 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 ADRB1P08588 477 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 CSH1P0DML2 217 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 CSH2P0DML3 217 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 POLR2BP30876 1174 aaKnown RBP12.63□□□□□ -0.39
CLIP3-204ENST00000590559 RAP1GAPP47736 663 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 RESTQ13127 1097 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 NFE2Q16621 373 aaPredicted RBP12.63□□□□□ -0.39
CLIP3-204ENST00000590559 CFAP221Q4G0U5 840 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 INTS6LQ5JSJ4 861 aaKnown RBP12.63□□□□□ -0.39
CLIP3-204ENST00000590559 TXNDC8Q6A555 127 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 TRIM68Q6AZZ1 485 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 SV2BQ7L1I2 683 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 OSTM1Q86WC4 334 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 TMEM86AQ8N2M4 240 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 STKLD1Q8NE28 680 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 RASSF8Q8NHQ8 419 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 FAM84AQ96KN4 292 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 CLIC6Q96NY7 704 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 GCNAQ96QF7 691 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 ACCSQ96QU6 501 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 FAM213AQ9BRX8 229 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 PI4K2AQ9BTU6 479 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 EBF3Q9H4W6 596 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 MRPL44Q9H9J2 332 aaKnown RBP12.63□□□□□ -0.39
CLIP3-204ENST00000590559 AGAP1Q9UPQ3 857 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 CACNA1BQ00975 2339 aa12.63□□□□□ -0.39
CLIP3-204ENST00000590559 USP24Q9UPU5 2620 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 TM4SF5O14894 197 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 GDF9O60383 454 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 PRPF40AO75400 957 aaKnown RBP12.62□□□□□ -0.39
CLIP3-204ENST00000590559 CYP2F1P24903 491 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 AVPR1AP37288 418 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 TSPY1Q01534 308 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 ZNF77Q15935 545 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 TAF12Q16514 161 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 CCDC142Q17RM4 750 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 HEATR6Q6AI08 1181 aaKnown RBP12.62□□□□□ -0.39
CLIP3-204ENST00000590559 FAM171BQ6P995 826 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 GAB3Q8WWW8 586 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms