RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 LGALS16A8MUM7 142 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 HMGB1P1B2RPK0 211 aaPredicted RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 C9IYK1 514 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 CFAP99D6REC4 459 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 ZNF213O14771 459 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 PPP1R12AO14974 1030 aaPredicted RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 POLR2DO15514 142 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 TEX33O43247 280 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 SH3BP5O60239 455 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 B4GALT3O60512 393 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 RANBP6O60518 1105 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 ATP1A1P05023 1023 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 CFIP05156 583 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 ADH1AP07327 375 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 BMP2P12643 396 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 PRLRP16471 622 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 IFNAR1P17181 557 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 TCP1P17987 556 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 EIF2AK2P19525 551 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 UBA1P22314 1058 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 EEF1GP26641 437 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 MARK3P27448 753 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 HOXA6P31267 233 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 SLC16A2P36021 539 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 ZNF76P36508 570 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 LIFRP42702 1097 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 VAV2P52735 878 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 NAP1L1P55209 391 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 ADAM17P78536 824 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 CDK17Q00537 523 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 SP4Q02446 784 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 ACTN3Q08043 901 aaPredicted RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 DPYDQ12882 1025 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 PAK1Q13153 545 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 NR5A1Q13285 461 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 HNRNPDQ14103 355 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 SLMAPQ14BN4 828 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 KRT31Q15323 416 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 NTRK3Q16288 839 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 CCDC96Q2M329 555 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 GLE1Q53GS7 698 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 C2orf27AQ580R0 203 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 FIGNQ5HY92 759 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 CEP85LQ5SZL2 805 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 C12orf60Q5U649 245 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 NAA35Q5VZE5 725 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 ARMCX6Q7L4S7 300 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 TMPRSS7Q7RTY8 843 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 ZC3H18Q86VM9 953 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 IQCA1Q86XH1 822 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 PALB2Q86YC2 1186 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 GLYCTKQ8IVS8 523 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 CD302Q8IX05 232 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 PARP9Q8IXQ6 854 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 TRIM22Q8IYM9 498 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 CCDC170Q8IYT3 715 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 ARFGAP2Q8N6H7 521 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 OTUD6BQ8N6M0 293 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 EIF1ADQ8N9N8 165 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 TRIM58Q8NG06 486 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 OR2I1PQ8NGU4 316 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 ITFG1Q8TB96 612 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 HELQQ8TDG4 1101 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 DNASE1L2Q92874 299 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 ITPKCQ96DU7 683 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 WBP1Q96G27 269 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 CEP95Q96GE4 821 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 IGSF21Q96ID5 467 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 CDK15Q96Q40 435 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 HHIPQ96QV1 700 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 TAAR1Q96RJ0 339 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 PPP1R16BQ96T49 567 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 MMS19Q96T76 1030 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 RHOBTB2Q9BYZ6 727 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.48□□□□□ -1.69
LIG3-211ENST00000588713 CSRNP2Q9H175 543 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 EPN3Q9H201 632 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 ARMT1Q9H993 441 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 MRPL17Q9NRX2 175 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 RGS18Q9NS28 235 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 RNF19AQ9NV58 838 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 POLR3BQ9NW08 1133 aaPredicted RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 SLC8A2Q9UPR5 921 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 CTNND2Q9UQB3 1225 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 REXO2Q9Y3B8 237 aaKnown RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 HYOU1Q9Y4L1 999 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 EPN1Q9Y6I3 576 aaPredicted RBP4.48□□□□□ -1.69
LIG3-211ENST00000588713 MYH4Q9Y623 1939 aa4.48□□□□□ -1.69
LIG3-211ENST00000588713 A0A1B0GUA9 196 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 A0A1W2PQJ5 194 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 LRRC10BA6NIK2 292 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 UPK3BL1B0FP48 263 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 KCNJ18B7U540 433 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 UPK3BL2E5RIL1 263 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 PLK4O00444 970 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 N4BP3O15049 544 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 TEX28O15482 410 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 GPAA1O43292 621 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 TACC1O75410 805 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 ECI2O75521 394 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms