RNA–Protein interactions for RNA: ENST00000588555.1

SCAMP4-210, Transcript of secretory carrier membrane protein 4, human

Gene SCAMP4, Length 1,785 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAMP4-210	ENST00000588555	ARHGAP17	Q68EM7	881 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	MFSD5	Q6N075	450 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	HASPIN	Q8TF76	798 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	L2HGDH	Q9H9P8	463 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	FAM49B	Q9NUQ9	324 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	RNF216	Q9NWF9	866 aa	Predicted RBP	27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	ALPK3	Q96L96	1907 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555		I3L4J1	428 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555		M0QYV0	167 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	URI1	O94763	535 aa	Predicted RBP	27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	GPD2	P43304	727 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	PAPD7	Q5XG87	772 aa	Known RBP	27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	SLFN11	Q7Z7L1	901 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	RSPH1	Q8WYR4	309 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	TNIP3	Q96KP6	325 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	UVRAG	Q9P2Y5	699 aa		27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	TIMM13	Q9Y5L4	95 aa	Predicted RBP	27.6	■■■□□ 2.01
SCAMP4-210	ENST00000588555	CYP11A1	P05108	521 aa		27.59	■■■□□ 2.01
SCAMP4-210	ENST00000588555	ODC1	P11926	461 aa		27.59	■■■□□ 2.01
SCAMP4-210	ENST00000588555	PKDCC	Q504Y2	493 aa		27.59	■■■□□ 2.01
SCAMP4-210	ENST00000588555	LLGL2	Q6P1M3	1020 aa		27.59	■■■□□ 2.01
SCAMP4-210	ENST00000588555	SUSD3	Q96L08	255 aa		27.59	■■■□□ 2.01
SCAMP4-210	ENST00000588555	CALR3	Q96L12	384 aa	Known RBP	27.59	■■■□□ 2.01
SCAMP4-210	ENST00000588555	NUP85	Q9BW27	656 aa		27.59	■■■□□ 2.01
SCAMP4-210	ENST00000588555	NRDE2	Q9H7Z3	1164 aa		27.59	■■■□□ 2.01
SCAMP4-210	ENST00000588555	BUB1B	O60566	1050 aa	Predicted RBP	27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	PFKM	P08237	780 aa		27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	LHX1	P48742	406 aa		27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	GOLGA7B	Q2TAP0	167 aa		27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	PTPN20	Q4JDL3	420 aa		27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	B3GALNT2	Q8NCR0	500 aa		27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	SPATA18	Q8TC71	538 aa		27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	FAM193B	Q96PV7	902 aa	Predicted RBP	27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	GOLPH3	Q9H4A6	298 aa		27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	DDX43	Q9NXZ2	648 aa	Known RBP	27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	PCDH10	Q9P2E7	1040 aa		27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	COL4A6	Q14031	1691 aa		27.58	■■■□□ 2.01
SCAMP4-210	ENST00000588555	OR1G1	P47890	313 aa		27.58	■■■□□ 2
SCAMP4-210	ENST00000588555	KIAA0319	Q5VV43	1072 aa		27.58	■■■□□ 2
SCAMP4-210	ENST00000588555	TTC30A	Q86WT1	665 aa		27.58	■■■□□ 2
SCAMP4-210	ENST00000588555	ZNF564	Q8TBZ8	553 aa	Predicted RBP	27.58	■■■□□ 2
SCAMP4-210	ENST00000588555	TLR10	Q9BXR5	811 aa		27.58	■■■□□ 2
SCAMP4-210	ENST00000588555	MRPL9	Q9BYD2	267 aa	Known RBP	27.58	■■■□□ 2
SCAMP4-210	ENST00000588555	ABHD14A-ACY1	A0A1B0GW23	586 aa		27.57	■■■□□ 2
SCAMP4-210	ENST00000588555	FTCD	O95954	541 aa		27.57	■■■□□ 2
SCAMP4-210	ENST00000588555	CALB1	P05937	261 aa		27.57	■■■□□ 2
SCAMP4-210	ENST00000588555	ACAT1	P24752	427 aa	Known RBP	27.57	■■■□□ 2
SCAMP4-210	ENST00000588555	LIN9	Q5TKA1	542 aa		27.57	■■■□□ 2
SCAMP4-210	ENST00000588555	PLEKHA7	Q6IQ23	1121 aa		27.57	■■■□□ 2
SCAMP4-210	ENST00000588555	ERICH1	Q86X53	443 aa		27.57	■■■□□ 2
SCAMP4-210	ENST00000588555	UBA3	Q8TBC4	463 aa		27.57	■■■□□ 2
SCAMP4-210	ENST00000588555	DNAI2	Q9GZS0	605 aa		27.57	■■■□□ 2
SCAMP4-210	ENST00000588555	ABCB6	Q9NP58	842 aa		27.57	■■■□□ 2
SCAMP4-210	ENST00000588555	HCST	Q9UBK5	93 aa		27.57	■■■□□ 2
SCAMP4-210	ENST00000588555	ATP2C2	O75185	946 aa		27.56	■■■□□ 2
SCAMP4-210	ENST00000588555	CCDC130	P13994	396 aa		27.56	■■■□□ 2
SCAMP4-210	ENST00000588555	PSMC1	P62191	440 aa	Known RBP	27.56	■■■□□ 2
SCAMP4-210	ENST00000588555	MEI1	Q5TIA1	1274 aa		27.56	■■■□□ 2
SCAMP4-210	ENST00000588555	TMEM199	Q8N511	208 aa		27.56	■■■□□ 2
SCAMP4-210	ENST00000588555	CPXM1	Q96SM3	734 aa		27.56	■■■□□ 2
SCAMP4-210	ENST00000588555	RTP3	Q9BQQ7	232 aa		27.56	■■■□□ 2
SCAMP4-210	ENST00000588555	PRG3	Q9Y2Y8	225 aa	Predicted RBP	27.56	■■■□□ 2
SCAMP4-210	ENST00000588555	MRFAP1	Q9Y605	127 aa		27.56	■■■□□ 2
SCAMP4-210	ENST00000588555	TCRBV5S1A1T	A0A578	114 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	TBKBP1	A7MCY6	615 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	RIOK3	O14730	519 aa	Known RBP	27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	PTPN1	P18031	435 aa	Known RBP	27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	PDCL	Q13371	301 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	CCDC142	Q17RM4	750 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	PHLDB2	Q86SQ0	1253 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	DAAM2	Q86T65	1068 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	TJP2	Q9UDY2	1190 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	DSE	Q9UL01	958 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	NCK2	O43639	380 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	MAMLD1	Q13495	774 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	SYCE1	Q8N0S2	351 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	CRTAC1	Q9NQ79	661 aa		27.55	■■■□□ 2
SCAMP4-210	ENST00000588555	NRP1	O14786	923 aa		27.54	■■■□□ 2
SCAMP4-210	ENST00000588555	DGKI	O75912	1065 aa		27.54	■■■□□ 2
SCAMP4-210	ENST00000588555	UPP2	O95045	317 aa		27.54	■■■□□ 2
SCAMP4-210	ENST00000588555	TYMP	P19971	482 aa		27.54	■■■□□ 2
SCAMP4-210	ENST00000588555	TKT	P29401	623 aa	Known RBP	27.54	■■■□□ 2
SCAMP4-210	ENST00000588555	C11orf63	Q6NUN7	778 aa		27.54	■■■□□ 2
SCAMP4-210	ENST00000588555	SLC2A14	Q8TDB8	520 aa		27.54	■■■□□ 2
SCAMP4-210	ENST00000588555	TOP1MT	Q969P6	601 aa		27.54	■■■□□ 2
SCAMP4-210	ENST00000588555	SYT15	Q9BQS2	421 aa		27.54	■■■□□ 2
SCAMP4-210	ENST00000588555	PCDHB8	Q9UN66	801 aa		27.54	■■■□□ 2
SCAMP4-210	ENST00000588555	GABRB2	P47870	512 aa		27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	NT5DC3	Q86UY8	548 aa		27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	LRRC43	Q8N309	656 aa		27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	ANKRD52	Q8NB46	1076 aa		27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	SLC35F5	Q8WV83	523 aa		27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	HNRNPAB	Q99729	332 aa	Known RBP	27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	HESX1	Q9UBX0	185 aa		27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	CDC23	Q9UJX2	597 aa		27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	CDH9	Q9ULB4	789 aa		27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	SNX12	Q9UMY4	172 aa		27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	SCIN	Q9Y6U3	715 aa		27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	ARHGEF37	A1IGU5	675 aa		27.53	■■■□□ 2
SCAMP4-210	ENST00000588555	SETSIP	P0DME0	302 aa		27.53	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms