RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 C1QTNF12Q5T7M4 302 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 RAP1GAP2Q684P5 730 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 TTLL5Q6EMB2 1281 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 ZDHHC24Q6UX98 284 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 KIAA0408Q6ZU52 694 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 DNAJC5GQ8N7S2 189 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 NKD2Q969F2 451 aaPredicted RBP5.56□□□□□ -1.52
SS18-223ENST00000583595 WRNIP1Q96S55 665 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 MYOCQ99972 504 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 TAF1DQ9H5J8 278 aaPredicted RBP5.56□□□□□ -1.52
SS18-223ENST00000583595 JMJD4Q9H9V9 463 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 TMEM8AQ9HCN3 771 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 SAYSD1Q9NPB0 183 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 A1CFQ9NQ94 594 aaKnown RBP5.56□□□□□ -1.52
SS18-223ENST00000583595 LANCL2Q9NS86 450 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 OLA1Q9NTK5 396 aaKnown RBP5.56□□□□□ -1.52
SS18-223ENST00000583595 ANKEF1Q9NU02 776 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 TMEM140Q9NV12 185 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 ING3Q9NXR8 418 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 GPRC5DQ9NZD1 345 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 ZFP69BQ9UJL9 534 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 MID2Q9UJV3 735 aa5.56□□□□□ -1.52
SS18-223ENST00000583595 CNOT11Q9UKZ1 510 aaKnown RBP5.56□□□□□ -1.52
SS18-223ENST00000583595 ZMYND8Q9ULU4 1186 aaPredicted RBP5.56□□□□□ -1.52
SS18-223ENST00000583595 FSD2A1L4K1 749 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 GRM6O15303 877 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 DAPK3O43293 454 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 RASSF9O75901 435 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 PLATP00750 562 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 ADRB1P08588 477 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 CST5P28325 142 aaPredicted RBP5.55□□□□□ -1.52
SS18-223ENST00000583595 CCR5P51681 352 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 STAT5BP51692 787 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 CASP6P55212 293 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 UCP3P55916 312 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 RAB32Q13637 225 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 KRT32Q14532 448 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 WDR72Q3MJ13 1102 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 TBC1D10BQ4KMP7 808 aaPredicted RBP5.55□□□□□ -1.52
SS18-223ENST00000583595 SLC9C2Q5TAH2 1124 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 DCAF12L1Q5VU92 463 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 FAM205BPQ63HN1 556 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 TRMT10BQ6PF06 316 aaKnown RBP5.55□□□□□ -1.52
SS18-223ENST00000583595 DSTYKQ6XUX3 929 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 NEK10Q6ZWH5 1172 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 RRAGAQ7L523 313 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 ANKRD23Q86SG2 305 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 TRMT2AQ8IZ69 625 aaKnown RBP5.55□□□□□ -1.52
SS18-223ENST00000583595 TCP11L2Q8N4U5 519 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 ANKRD52Q8NB46 1076 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 ZNF480Q8WV37 535 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 ZCCHC14Q8WYQ9 949 aaKnown RBP5.55□□□□□ -1.52
SS18-223ENST00000583595 UIMC1Q96RL1 719 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 RBM15Q96T37 977 aaKnown RBP eCLIP5.55□□□□□ -1.52
SS18-223ENST00000583595 SDF4Q9BRK5 362 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 PAIP1Q9H074 479 aaKnown RBP5.55□□□□□ -1.52
SS18-223ENST00000583595 TMEM168Q9H0V1 697 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 PABPC3Q9H361 631 aaKnown RBP5.55□□□□□ -1.52
SS18-223ENST00000583595 DLL4Q9NR61 685 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.55□□□□□ -1.52
SS18-223ENST00000583595 TMEM160Q9NX00 188 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 ZDHHC8Q9ULC8 765 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 NOL7Q9UMY1 257 aaKnown RBP5.55□□□□□ -1.52
SS18-223ENST00000583595 HS3ST4Q9Y661 456 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 CUX2O14529 1486 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 NCAPD3P42695 1498 aa5.55□□□□□ -1.52
SS18-223ENST00000583595 ATAD2BQ9ULI0 1458 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 DNPH1O43598 174 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 USO1O60763 962 aaKnown RBP5.54□□□□□ -1.52
SS18-223ENST00000583595 MAFO75444 373 aaPredicted RBP5.54□□□□□ -1.52
SS18-223ENST00000583595 ITGA10O75578 1167 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 DNAJB5O75953 348 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 UNC5CO95185 931 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 ITGA2BP08514 1039 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 IL1R2P27930 398 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 HOXD12P35452 270 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 KRT20P35900 424 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 SLC11A2P49281 568 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 PAPOLAP51003 745 aaKnown RBP5.54□□□□□ -1.52
SS18-223ENST00000583595 DCAF7P61962 342 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 SLC12A1Q13621 1099 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 HABP2Q14520 560 aaPredicted RBP5.54□□□□□ -1.52
SS18-223ENST00000583595 CCNG2Q16589 344 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 SLC44A4Q53GD3 710 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 SPECC1Q5M775 1068 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 TSHZ3Q63HK5 1081 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 LMBRD2Q68DH5 695 aaPredicted RBP5.54□□□□□ -1.52
SS18-223ENST00000583595 CRTC1Q6UUV9 634 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 DPP8Q6V1X1 898 aaPredicted RBP5.54□□□□□ -1.52
SS18-223ENST00000583595 DBX2Q6ZNG2 339 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 CXXC5Q7LFL8 322 aaKnown RBP5.54□□□□□ -1.52
SS18-223ENST00000583595 OTOP2Q7RTS6 562 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 KRT77Q7Z794 578 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 UNC5BQ8IZJ1 945 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 MDM1Q8TC05 714 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 ZUFSPQ96AP4 578 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 NUDT16L1Q9BRJ7 211 aaKnown RBP5.54□□□□□ -1.52
SS18-223ENST00000583595 DDX23Q9BUQ8 820 aaKnown RBP5.54□□□□□ -1.52
SS18-223ENST00000583595 PCDHAC1Q9H158 963 aa5.54□□□□□ -1.52
SS18-223ENST00000583595 EPS8L2Q9H6S3 715 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms