RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 FAM13BQ9NYF5 915 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 ZMYM5Q9UJ78 669 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 ITGA11Q9UKX5 1188 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 PATJQ8NI35 1801 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 ZNF292O60281 2723 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 DCHS1Q96JQ0 3298 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 ZNF233A6NK53 670 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 KIAA0391O15091 583 aaKnown RBP22■■□□□ 1.11
SHMT1-209ENST00000582653 EIF3DO15371 548 aaKnown RBP eCLIP22■■□□□ 1.11
SHMT1-209ENST00000582653 TGFB1I1O43294 461 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 HCRTO43612 131 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 HUS1O60921 280 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 ACAT1P24752 427 aaKnown RBP22■■□□□ 1.11
SHMT1-209ENST00000582653 NRLP54845 237 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 RBP5P82980 135 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 PPP2R5DQ14738 602 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 UNC13DQ70J99 1090 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 GRAMD1CQ8IYS0 662 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 LRRC52Q8N7C0 313 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 RDH13Q8NBN7 331 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 HINFPQ9BQA5 517 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 ACBD6Q9BR61 282 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 SLC46A2Q9BY10 475 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 INTS13Q9NVM9 706 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 DDX43Q9NXZ2 648 aaKnown RBP22■■□□□ 1.11
SHMT1-209ENST00000582653 RCOR1Q9UKL0 485 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 PCDHB5Q9Y5E4 795 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 GTF3C3Q9Y5Q9 886 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 SNX9Q9Y5X1 595 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 FRYLO94915 3013 aa22■■□□□ 1.11
SHMT1-209ENST00000582653 CLIC2O15247 247 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 GPR15P49685 360 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 KPNA1P52294 538 aaPredicted RBP21.99■■□□□ 1.11
SHMT1-209ENST00000582653 CYP4F8P98187 520 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 EHHADHQ08426 723 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 CUL4BQ13620 913 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 NFE2Q16621 373 aaPredicted RBP21.99■■□□□ 1.11
SHMT1-209ENST00000582653 CCDC142Q17RM4 750 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 ATL3Q6DD88 541 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 OSTM1Q86WC4 334 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 RALGPS2Q86X27 583 aaPredicted RBP21.99■■□□□ 1.11
SHMT1-209ENST00000582653 TMEM86AQ8N2M4 240 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 STKLD1Q8NE28 680 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 SCFD1Q8WVM8 642 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 ANKRD36BP1Q96IX9 119 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 CHAMP1Q96JM3 812 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 PI4K2AQ9BTU6 479 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 SLC39A2Q9NP94 309 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 AGPAT3Q9NRZ7 376 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 GDAP2Q9NXN4 497 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 CFAP45Q9UL16 551 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 SPTBN4Q9H254 2564 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 COL4A2P08572 1712 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 GVINP1Q7Z2Y8 2422 aa21.99■■□□□ 1.11
SHMT1-209ENST00000582653 MYBPHLA2RUH7 354 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 SOBPA7XYQ1 873 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 TDGF1P13385 188 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 CCR3P51677 355 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 TSPY1Q01534 308 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 BPIFB1Q8TDL5 484 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 GCNAQ96QF7 691 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 EPC1Q9H2F5 836 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 MAGEF1Q9HAY2 307 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 GTSE1Q9NYZ3 720 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 SERTAD1Q9UHV2 236 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 GTF3C4Q9UKN8 822 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 EP300Q09472 2414 aaPredicted RBP21.98■■□□□ 1.11
SHMT1-209ENST00000582653 TICRRQ7Z2Z1 1910 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 F5P12259 2224 aa21.98■■□□□ 1.11
SHMT1-209ENST00000582653 SLC38A8A6NNN8 435 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 PRPF40AO75400 957 aaKnown RBP21.97■■□□□ 1.11
SHMT1-209ENST00000582653 F11P03951 625 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 HMGA1P17096 107 aaKnown RBP21.97■■□□□ 1.11
SHMT1-209ENST00000582653 CXCL12P48061 93 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 CYP2J2P51589 502 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 PLCB2Q00722 1185 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 SURF1Q15526 300 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 SOWAHAQ2M3V2 549 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 SDHAF4Q5VUM1 108 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 TMEM150AQ86TG1 271 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 CMTM8Q8IZV2 173 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 CELF5Q8N6W0 485 aaKnown RBP21.97■■□□□ 1.11
SHMT1-209ENST00000582653 SPATA18Q8TC71 538 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 ZFYVE19Q96K21 471 aa21.97■■□□□ 1.11
SHMT1-209ENST00000582653 THG1LQ9NWX6 298 aaKnown RBP21.97■■□□□ 1.11
SHMT1-209ENST00000582653 SPECC1L-ADORA2AF8WAN1 911 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 TNNC2P02585 160 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 CYP2F1P24903 491 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 SOX9P48436 509 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 MYL7Q01449 175 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 LRRC32Q14392 662 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 GAS6Q14393 721 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 SNRNP35Q16560 246 aaKnown RBP21.96■■□□□ 1.11
SHMT1-209ENST00000582653 DUOXA2Q1HG44 320 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 INTS6LQ5JSJ4 861 aaKnown RBP21.96■■□□□ 1.11
SHMT1-209ENST00000582653 DGKKQ5KSL6 1271 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 DPH6Q7L8W6 267 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 ADGRF2Q8IZF7 708 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 SPEM1Q8N4L4 309 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 TOP6BLQ8N6T0 577 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms