RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 C1QTNF8P60827 252 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 CNGA2Q16280 664 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 GOLGA7BQ2TAP0 167 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 CYP4A22Q5TCH4 519 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 CCDC181Q5TID7 509 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 PLEKHA7Q6IQ23 1121 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 LIMS2Q7Z4I7 341 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 UNC93AQ86WB7 457 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 ERICH1Q86X53 443 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 TOP6BLQ8N6T0 577 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 APPL2Q8NEU8 664 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 UBA3Q8TBC4 463 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 UBXN4Q92575 508 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 HES6Q96HZ4 224 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 MS4A14Q96JA4 679 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 PBKQ96KB5 322 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 LPIN3Q9BQK8 851 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 MFRPQ9BY79 579 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 CRISPLD2Q9H0B8 497 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 SNX25Q9H3E2 840 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 DPEP3Q9H4B8 488 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 UBN1Q9NPG3 1134 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 CYTH4Q9UIA0 394 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 ANAPC7Q9UJX3 599 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 KIAA1257Q9ULG3 409 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.15□□□□□ -0.62
SS18-217ENST00000580958 ALG6Q9Y672 507 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 VWA8A3KMH1 1905 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 PDGFRBP09619 1106 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 COMTP21964 271 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 WARSP23381 471 aaKnown RBP11.14□□□□□ -0.63
SS18-217ENST00000580958 RPL9P32969 192 aaKnown RBP11.14□□□□□ -0.63
SS18-217ENST00000580958 GNL1P36915 607 aaPredicted RBP11.14□□□□□ -0.63
SS18-217ENST00000580958 PAFAH1B1P43034 410 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 C2orf54Q08AI8 447 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 GRIK3Q13003 919 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 MAMLD1Q13495 774 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 GPNMBQ14956 572 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 STILQ15468 1287 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 PTPN20Q4JDL3 420 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 PPP1R26Q5T8A7 1209 aaPredicted RBP11.14□□□□□ -0.63
SS18-217ENST00000580958 DNAJC24Q6P3W2 148 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 FBXO46Q6PJ61 603 aaPredicted RBP11.14□□□□□ -0.63
SS18-217ENST00000580958 LCLAT1Q6UWP7 414 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 SLC39A5Q6ZMH5 540 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 ADGRF2Q8IZF7 708 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 PDCL2Q8N4E4 241 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 C12orf29Q8N999 325 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 NOA1Q8NC60 698 aaKnown RBP11.14□□□□□ -0.63
SS18-217ENST00000580958 RABGGTAQ92696 567 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 ZNF333Q96JL9 665 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 SENP8Q96LD8 212 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 PAAF1Q9BRP4 392 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 FTHL17Q9BXU8 183 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 TRIM7Q9C029 511 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 MRPL47Q9HD33 250 aaKnown RBP11.14□□□□□ -0.63
SS18-217ENST00000580958 FAM49BQ9NUQ9 324 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 TJP2Q9UDY2 1190 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 TSPAN16Q9UKR8 245 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 SCINQ9Y6U3 715 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 NLRC5Q86WI3 1866 aa11.14□□□□□ -0.63
SS18-217ENST00000580958 TCRBV5S1A1TA0A578 114 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 CES2O00748 559 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 INPPL1O15357 1258 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 SPOPO43791 374 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 CEP104O60308 925 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 EOMESO95936 686 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 LMO2P25791 158 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 GPD2P43304 727 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 RNASE9P60153 205 aaKnown RBP11.13□□□□□ -0.63
SS18-217ENST00000580958 FAM189BP81408 668 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 UPP1Q16831 310 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 TCTN1Q2MV58 587 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 TRIM60Q495X7 471 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 CFAP221Q4G0U5 840 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 PLEKHG4Q58EX7 1191 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 CLLU1OSQ5K130 101 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 WSCD1Q658N2 575 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 ARHGAP17Q68EM7 881 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 DSTYKQ6XUX3 929 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 SLC24A5Q71RS6 500 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 ZNF572Q7Z3I7 529 aaPredicted RBP11.13□□□□□ -0.63
SS18-217ENST00000580958 DNAJC5GQ8N7S2 189 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 MSANTD4Q8NCY6 345 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 C3orf58Q8NDZ4 430 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 FEZF2Q8TBJ5 459 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 DIS3LQ8TF46 1054 aaKnown RBP11.13□□□□□ -0.63
SS18-217ENST00000580958 SEPT8Q92599 483 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 KRT35Q92764 455 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 RPGRIP1Q96KN7 1286 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 CPXM1Q96SM3 734 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 SELENOOQ9BVL4 669 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 EPC1Q9H2F5 836 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 PARVAQ9NVD7 372 aa11.13□□□□□ -0.63
SS18-217ENST00000580958 PATJQ8NI35 1801 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 MIF4GDA9UHW6 222 aaKnown RBP11.12□□□□□ -0.63
SS18-217ENST00000580958 GOLGA8SH3BPF8 625 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 MYO1FO00160 1098 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 ENPP3O14638 875 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 PROSCO94903 275 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms