RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 MAPRE1Q15691 268 aaKnown RBP16.54■□□□□ 0.24
SS18-216ENST00000580751 NFE2Q16621 373 aaPredicted RBP16.54■□□□□ 0.24
SS18-216ENST00000580751 SLC39A12Q504Y0 691 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 EP400NLQ6ZTU2 488 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 PPM1KQ8N3J5 372 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 KREMEN2Q8NCW0 462 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 ZNF397Q8NF99 534 aaPredicted RBP16.54■□□□□ 0.24
SS18-216ENST00000580751 VN1R2Q8NFZ6 395 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 NEK11Q8NG66 645 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 C2orf15Q8WU43 125 aaKnown RBP16.54■□□□□ 0.24
SS18-216ENST00000580751 TATDN2Q93075 761 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 TNIP3Q96KP6 325 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 PCMTD1Q96MG8 357 aaPredicted RBP16.54■□□□□ 0.24
SS18-216ENST00000580751 MAN1C1Q9NR34 630 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 MYO6Q9UM54 1294 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 BARX2Q9UMQ3 279 aaPredicted RBP16.54■□□□□ 0.24
SS18-216ENST00000580751 CAPN11Q9UMQ6 739 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 COG5Q9UP83 839 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 PLXNA3P51805 1871 aa16.54■□□□□ 0.24
SS18-216ENST00000580751 SPDYE4A6NLX3 237 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 LINC01565O15544 149 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 PDGFRBP09619 1106 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 CD58P19256 250 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 LMO2P25791 158 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 PON1P27169 355 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 ELF1P32519 619 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 KCNMA1Q12791 1236 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 CCDC149Q6ZUS6 474 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 RTL10Q7L3V2 364 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 HLA-CQ95604 372 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 TMEM209Q96SK2 561 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 ARID3AQ99856 593 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 TTYH3Q9C0H2 523 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 UBE2ZQ9H832 354 aaPredicted RBP16.53■□□□□ 0.24
SS18-216ENST00000580751 SFXN1Q9H9B4 322 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 CISHQ9NSE2 258 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 CEP72Q9P209 647 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 APEX2Q9UBZ4 518 aa16.53■□□□□ 0.24
SS18-216ENST00000580751 MTMR11A4FU01 709 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 AKR1B15C9JRZ8 316 aaPredicted RBP16.52■□□□□ 0.24
SS18-216ENST00000580751 PRRG1O14668 218 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 HCRTO43612 131 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 NRDCO43847 1150 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 TBX10O75333 385 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 CILPO75339 1184 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 HOXB8P17481 243 aaPredicted RBP16.52■□□□□ 0.24
SS18-216ENST00000580751 SLC9A1P19634 815 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 NDST1P52848 882 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 PSMC1P62191 440 aaKnown RBP16.52■□□□□ 0.24
SS18-216ENST00000580751 ZBED6P86452 979 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 RBM10P98175 930 aaKnown RBP16.52■□□□□ 0.24
SS18-216ENST00000580751 ADCY1Q08828 1119 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 ANKRD54Q6NXT1 300 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 RNF19BQ6ZMZ0 732 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 C4orf50Q6ZRC1 276 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 ENOSF1Q7L5Y1 443 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 TCEAL8Q8IYN2 117 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 SPC24Q8NBT2 197 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 CCDC112Q8NEF3 446 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 SPPL2BQ8TCT7 592 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 JAKMIP2Q96AA8 810 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 PGLYRP2Q96PD5 576 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 PANX2Q96RD6 677 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 PKMYT1Q99640 499 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 NT5C1AQ9BXI3 368 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 ZDHHC7Q9NXF8 308 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 HSFX1Q9UBD0 423 aa16.52■□□□□ 0.24
SS18-216ENST00000580751 LUC7L2Q9Y383 392 aaKnown RBP16.52■□□□□ 0.24
SS18-216ENST00000580751 COL6A3P12111 3177 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 PRUNE2Q8WUY3 3088 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.51■□□□□ 0.23
SS18-216ENST00000580751 GYPCP04921 128 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 C8AP07357 584 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 SPATA31D3P0C874 917 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 HOXA9P31269 272 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 MFAP3P55082 362 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 TSR1Q2NL82 804 aaKnown RBP16.51■□□□□ 0.23
SS18-216ENST00000580751 KLHDC7AQ5VTJ3 777 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 PHLDB3Q6NSJ2 640 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 FAM171BQ6P995 826 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 SPATA31D4Q6ZUB0 917 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 RRAGAQ7L523 313 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 CCDC186Q7Z3E2 898 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 LRRTM3Q86VH5 581 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 ARHGEF19Q8IW93 802 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 B3GALNT2Q8NCR0 500 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 SLC7A14Q8TBB6 771 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 MYCBPAPQ8TBZ2 947 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 SYN2Q92777 582 aaPredicted RBP16.51■□□□□ 0.23
SS18-216ENST00000580751 TRIM44Q96DX7 344 aaPredicted RBP16.51■□□□□ 0.23
SS18-216ENST00000580751 FUBP3Q96I24 572 aaKnown RBP eCLIP16.51■□□□□ 0.23
SS18-216ENST00000580751 DPEP3Q9H4B8 488 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 CYP4F11Q9HBI6 524 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 ABCB6Q9NP58 842 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 CRTAC1Q9NQ79 661 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 CLEC1BQ9P126 229 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 HMGXB4Q9UGU5 601 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 GTF3C4Q9UKN8 822 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 NME7Q9Y5B8 376 aa16.51■□□□□ 0.23
SS18-216ENST00000580751 PCDHB5Q9Y5E4 795 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms