RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 HTRA4P83105 476 aaPredicted RBP26.66■■□□□ 1.86
SHMT1-207ENST00000580002 OVOS1Q6IE37 1185 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 ACAD10Q6JQN1 1059 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 LRRTM3Q86VH5 581 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 CMTR2Q8IYT2 770 aaKnown RBP26.66■■□□□ 1.86
SHMT1-207ENST00000580002 B3GALNT2Q8NCR0 500 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 ZBED2Q9BTP6 218 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 THAP2Q9H0W7 228 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 TJP2Q9UDY2 1190 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 PCDHGC3Q9UN70 934 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 TULP2O00295 520 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 ATMINO43313 823 aaPredicted RBP26.65■■□□□ 1.86
SHMT1-207ENST00000580002 FAM163BP0C2L3 166 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 ADORA2BP29275 332 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 LHX1P48742 406 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 GOLGA7BQ2TAP0 167 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 MDH1BQ5I0G3 518 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 FAM109BQ6ICB4 259 aaPredicted RBP26.65■■□□□ 1.86
SHMT1-207ENST00000580002 PAQR9Q6ZVX9 377 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 TTC30AQ86WT1 665 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 HERC6Q8IVU3 1022 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 SYT15Q9BQS2 421 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 TMLHEQ9NVH6 421 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 GTF3C4Q9UKN8 822 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 GUCA1BQ9UMX6 200 aa26.65■■□□□ 1.86
SHMT1-207ENST00000580002 TSC2P49815 1807 aa26.64■■□□□ 1.86
SHMT1-207ENST00000580002 GRXCR1A8MXD5 290 aa26.64■■□□□ 1.86
SHMT1-207ENST00000580002 RTN2O75298 545 aa26.64■■□□□ 1.86
SHMT1-207ENST00000580002 H2AFZP0C0S5 128 aa26.64■■□□□ 1.86
SHMT1-207ENST00000580002 OR4Q2P0C623 313 aa26.64■■□□□ 1.86
SHMT1-207ENST00000580002 LINC00271P0C7V0 271 aa26.64■■□□□ 1.86
SHMT1-207ENST00000580002 RABGGTBP53611 331 aa26.64■■□□□ 1.86
SHMT1-207ENST00000580002 H2AFVQ71UI9 128 aa26.64■■□□□ 1.86
SHMT1-207ENST00000580002 METTL23Q86XA0 190 aa26.64■■□□□ 1.86
SHMT1-207ENST00000580002 SLC2A14Q8TDB8 520 aa26.64■■□□□ 1.86
SHMT1-207ENST00000580002 M0QYV0 167 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 ZNF500O60304 480 aaPredicted RBP26.63■■□□□ 1.85
SHMT1-207ENST00000580002 GZMAP12544 262 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 ATP2A2P16615 1042 aaKnown RBP26.63■■□□□ 1.85
SHMT1-207ENST00000580002 TYMPP19971 482 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 RTP2Q5QGT7 225 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 LCLAT1Q6UWP7 414 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 COLGALT1Q8NBJ5 622 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 IGSF21Q96ID5 467 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 RRAGDQ9NQL2 400 aaPredicted RBP26.63■■□□□ 1.85
SHMT1-207ENST00000580002 VWA8A3KMH1 1905 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 PJA2O43164 708 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 EFEMP2O95967 443 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 YWHAHQ04917 246 aaPredicted RBP26.63■■□□□ 1.85
SHMT1-207ENST00000580002 SHHQ15465 462 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 VARS2Q5ST30 1063 aaKnown RBP26.63■■□□□ 1.85
SHMT1-207ENST00000580002 RASIP1Q5U651 963 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 SPRED2Q7Z698 418 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 C16orf45Q96MC5 204 aaPredicted RBP26.63■■□□□ 1.85
SHMT1-207ENST00000580002 B3GNT5Q9BYG0 378 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 RHOBTB2Q9BYZ6 727 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 KIAA1257Q9ULG3 409 aa26.63■■□□□ 1.85
SHMT1-207ENST00000580002 MACROD2A1Z1Q3 448 aa26.62■■□□□ 1.85
SHMT1-207ENST00000580002 MED7O43513 233 aa26.62■■□□□ 1.85
SHMT1-207ENST00000580002 MYOGP15173 224 aa26.62■■□□□ 1.85
SHMT1-207ENST00000580002 FGFR3P22607 806 aa26.62■■□□□ 1.85
SHMT1-207ENST00000580002 GPD2P43304 727 aa26.62■■□□□ 1.85
SHMT1-207ENST00000580002 CENPCQ03188 943 aa26.62■■□□□ 1.85
SHMT1-207ENST00000580002 PKDCCQ504Y2 493 aa26.62■■□□□ 1.85
SHMT1-207ENST00000580002 RSPO2Q6UXX9 243 aaPredicted RBP26.62■■□□□ 1.85
SHMT1-207ENST00000580002 FUKQ8N0W3 1084 aa26.62■■□□□ 1.85
SHMT1-207ENST00000580002 SLC39A11Q8N1S5 342 aa26.62■■□□□ 1.85
SHMT1-207ENST00000580002 SECISBP2LQ93073 1101 aaKnown RBP26.62■■□□□ 1.85
SHMT1-207ENST00000580002 DSEQ9UL01 958 aa26.62■■□□□ 1.85
SHMT1-207ENST00000580002 TRAPPC3O43617 180 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 ARHGEF15O94989 841 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 PAX3P23760 479 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 PTP4A2Q12974 167 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 ARHGAP17Q68EM7 881 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 MMS22LQ6ZRQ5 1243 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 TNIP3Q96KP6 325 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 ZNF558Q96NG5 402 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 PKMYT1Q99640 499 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 C11orf70Q9BRQ4 267 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 CDH9Q9ULB4 789 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 SF3B1O75533 1304 aaKnown RBP eCLIP26.61■■□□□ 1.858e-11■■■■■ 206.8
SHMT1-207ENST00000580002 PIK3R2O00459 728 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 BUB1O43683 1085 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 BEST1O76090 585 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 CDH5P33151 784 aaPredicted RBP26.61■■□□□ 1.85
SHMT1-207ENST00000580002 KIF5AQ12840 1032 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 ARHGAP29Q52LW3 1261 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 C10orf76Q5T2E6 689 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 PRSS55Q6UWB4 352 aaPredicted RBP26.61■■□□□ 1.85
SHMT1-207ENST00000580002 MCOLN2Q8IZK6 566 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 PCED1BQ96HM7 432 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 ACBD6Q9BR61 282 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 TMEM30AQ9NV96 361 aa26.61■■□□□ 1.85
SHMT1-207ENST00000580002 GABBR2O75899 941 aa26.6■■□□□ 1.85
SHMT1-207ENST00000580002 OAZ2O95190 189 aa26.6■■□□□ 1.85
SHMT1-207ENST00000580002 CACNA2D1P54289 1103 aa26.6■■□□□ 1.85
SHMT1-207ENST00000580002 MRPL58Q14197 206 aaKnown RBP26.6■■□□□ 1.85
SHMT1-207ENST00000580002 INTS6LQ5JSJ4 861 aaKnown RBP26.6■■□□□ 1.85
SHMT1-207ENST00000580002 SMYD5Q6GMV2 418 aa26.6■■□□□ 1.85
SHMT1-207ENST00000580002 TRIM72Q6ZMU5 477 aa26.6■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms