RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 LINC01565O15544 149 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 TGM5O43548 720 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 SPATA31D3P0C874 917 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 UCHL3P15374 230 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 EPCAMP16422 314 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 PTPN1P18031 435 aaKnown RBP9.13□□□□□ -0.95
NUP88-211ENST00000575976 PBX1P40424 430 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 CLCN4P51793 760 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 RAD23BP54727 409 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 MFAP3P55082 362 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 POLR2FP61218 127 aaKnown RBP9.13□□□□□ -0.95
NUP88-211ENST00000575976 YWHAEP62258 255 aaKnown RBP9.13□□□□□ -0.95
NUP88-211ENST00000575976 RBM10P98175 930 aaKnown RBP9.13□□□□□ -0.95
NUP88-211ENST00000575976 TSPY1Q01534 308 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 GPR17Q13304 367 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 CCDC85BQ15834 202 aaPredicted RBP9.13□□□□□ -0.95
NUP88-211ENST00000575976 UVSSAQ2YD98 709 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 SLC39A12Q504Y0 691 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 LLGL2Q6P1M3 1020 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 FAM171BQ6P995 826 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 SARM1Q6SZW1 724 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 SPATA31D4Q6ZUB0 917 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 ENOSF1Q7L5Y1 443 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 ACOT1Q86TX2 421 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 PPFIBP1Q86W92 1011 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 DCP1BQ8IZD4 617 aaKnown RBP9.13□□□□□ -0.95
NUP88-211ENST00000575976 CRYBG2Q8N1P7 616 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 TTC39CQ8N584 583 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 NEK11Q8NG66 645 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 ZNF461Q8TAF7 563 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 PPP2R3CQ969Q6 453 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 FAM81BQ96LP2 452 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 PGLYRP2Q96PD5 576 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 CDCA3Q99618 268 aaPredicted RBP9.13□□□□□ -0.95
NUP88-211ENST00000575976 NT5C1AQ9BXI3 368 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 NAA15Q9BXJ9 866 aaKnown RBP9.13□□□□□ -0.95
NUP88-211ENST00000575976 CRTAC1Q9NQ79 661 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 HCFC2Q9Y5Z7 792 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 ATG2AQ2TAZ0 1938 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 CHD9Q3L8U1 2897 aa9.13□□□□□ -0.95
NUP88-211ENST00000575976 MTMR11A4FU01 709 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 CBFA2T2O43439 604 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 ABLIM3O94929 683 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 SEC24AO95486 1093 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 VNN2O95498 520 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 GLP2RO95838 553 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 GLUD1P00367 558 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 PNMA6AP0CW24 399 aaPredicted RBP9.12□□□□□ -0.95
NUP88-211ENST00000575976 KRT5P13647 590 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 ATF2P15336 505 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 ADCY1Q08828 1119 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 ADAM15Q13444 863 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 RAPGEF1Q13905 1077 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 KCNC3Q14003 757 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 DRAP1Q14919 205 aaPredicted RBP9.12□□□□□ -0.95
NUP88-211ENST00000575976 MDH1BQ5I0G3 518 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 TMEM31Q5JXX7 168 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 TPGS2Q68CL5 300 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 TMEM270Q6UE05 265 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 EFHBQ8N7U6 833 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 C12orf29Q8N999 325 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 SLC4A11Q8NBS3 891 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 ATAD1Q8NBU5 361 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 RBBP8NLQ8NC74 664 aaPredicted RBP9.12□□□□□ -0.95
NUP88-211ENST00000575976 B3GALNT2Q8NCR0 500 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 KREMEN2Q8NCW0 462 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 VN1R2Q8NFZ6 395 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 MYCBPAPQ8TBZ2 947 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 SHC3Q92529 594 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 MYLPFQ96A32 169 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 JAKMIP2Q96AA8 810 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 PCED1BQ96HM7 432 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 TMEM176AQ96HP8 235 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 TNIP3Q96KP6 325 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 LRFN3Q9BTN0 628 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 B3GNT5Q9BYG0 378 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 TRIM5Q9C035 493 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 GPR88Q9GZN0 384 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 CRISPLD1Q9H336 500 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 FAM124BQ9H5Z6 455 aaPredicted RBP9.12□□□□□ -0.95
NUP88-211ENST00000575976 NLRC4Q9NPP4 1024 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 AFF4Q9UHB7 1163 aaKnown RBP9.12□□□□□ -0.95
NUP88-211ENST00000575976 CNTN6Q9UQ52 1028 aa9.12□□□□□ -0.95
NUP88-211ENST00000575976 CHD7Q9P2D1 2997 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 FOXN3O00409 490 aaPredicted RBP9.11□□□□□ -0.95
NUP88-211ENST00000575976 CLDN5O00501 218 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 C1RP00736 705 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 CALCAP01258 141 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 TPM3P06753 285 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 CCDC130P13994 396 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 RFX1P22670 979 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 ELF1P32519 619 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 USP8P40818 1118 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 ZNF132P52740 706 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 CYP27A1Q02318 531 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 SMARCB1Q12824 385 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 DUSP4Q13115 394 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 MAPRE1Q15691 268 aaKnown RBP9.11□□□□□ -0.95
NUP88-211ENST00000575976 NFE2Q16621 373 aaPredicted RBP9.11□□□□□ -0.95
NUP88-211ENST00000575976 PAQR9Q6ZVX9 377 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms