RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 SUSD6Q92537 303 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 ATOH1Q92858 354 aaPredicted RBP11.79□□□□□ -0.52
CHD3-216ENST00000573936 RPGRIP1Q96KN7 1286 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 MED15Q96RN5 788 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 RTP3Q9BQQ7 232 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 APOL5Q9BWW9 433 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 PRKD2Q9BZL6 878 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 FAM124BQ9H5Z6 455 aaPredicted RBP11.79□□□□□ -0.52
CHD3-216ENST00000573936 CYP3A43Q9HB55 503 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 PIDD1Q9HB75 910 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 POLIQ9UNA4 740 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 VWA8A3KMH1 1905 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 CFAP54Q96N23 3096 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 WDR87Q6ZQQ6 2873 aa11.79□□□□□ -0.52
CHD3-216ENST00000573936 SCN1AP35498 2009 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 MTMR11A4FU01 709 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 ALDH1A3P47895 512 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 NOP14P78316 857 aaKnown RBP11.78□□□□□ -0.52
CHD3-216ENST00000573936 TMC5Q6UXY8 1006 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 UNC93AQ86WB7 457 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 OSTM1Q86WC4 334 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 ELMOD1Q8N336 334 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 SMG7Q92540 1137 aaKnown RBP11.78□□□□□ -0.52
CHD3-216ENST00000573936 TMEM209Q96SK2 561 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 SYT15Q9BQS2 421 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 MRPL45Q9BRJ2 306 aaKnown RBP11.78□□□□□ -0.52
CHD3-216ENST00000573936 BCO2Q9BYV7 579 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 NIF3L1Q9GZT8 377 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 NFE2L3Q9Y4A8 694 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 PCDHB5Q9Y5E4 795 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 CACNA1HO95180 2353 aa11.78□□□□□ -0.52
CHD3-216ENST00000573936 SMTNL1A8MU46 457 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 A8MXQ7 604 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 LOC730098B7Z3J9 87 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 GFRA3O60609 400 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 RFPL2O75678 378 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 SEC24AO95486 1093 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 TPM2P07951 284 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 PDGFRBP09619 1106 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 SP100P23497 879 aaPredicted RBP11.77□□□□□ -0.53
CHD3-216ENST00000573936 CDH8P55286 799 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 YWHAEP62258 255 aaKnown RBP11.77□□□□□ -0.53
CHD3-216ENST00000573936 SIGLEC14Q08ET2 396 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 DUSP4Q13115 394 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 CBX2Q14781 532 aaPredicted RBP11.77□□□□□ -0.53
CHD3-216ENST00000573936 MAN2A1Q16706 1144 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 SPOPLQ6IQ16 392 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 FAM171BQ6P995 826 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 SCARA5Q6ZMJ2 495 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 C4orf50Q6ZRC1 276 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 LRRTM3Q86VH5 581 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 IRF2BP1Q8IU81 584 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 SEMA4DQ92854 862 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 FUBP3Q96I24 572 aaKnown RBP eCLIP11.77□□□□□ -0.53
CHD3-216ENST00000573936 TNIP3Q96KP6 325 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 PGLYRP2Q96PD5 576 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 PI4K2AQ9BTU6 479 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 PHF7Q9BWX1 381 aaPredicted RBP11.77□□□□□ -0.53
CHD3-216ENST00000573936 SMYD3Q9H7B4 428 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 APOBEC3GQ9HC16 384 aaKnown RBP11.77□□□□□ -0.53
CHD3-216ENST00000573936 ABCB6Q9NP58 842 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 GTF3C4Q9UKN8 822 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 ASB3Q9Y575 518 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 INSL5Q9Y5Q6 135 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 DMDP11532 3685 aa11.77□□□□□ -0.53
CHD3-216ENST00000573936 KCNJ18B7U540 433 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 CCL16O15467 120 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 HAPLN1P10915 354 aaPredicted RBP11.76□□□□□ -0.53
CHD3-216ENST00000573936 PTPN2P17706 415 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 PTPN1P18031 435 aaKnown RBP11.76□□□□□ -0.53
CHD3-216ENST00000573936 TBXAS1P24557 533 aaPredicted RBP11.76□□□□□ -0.53
CHD3-216ENST00000573936 ACAT1P24752 427 aaKnown RBP11.76□□□□□ -0.53
CHD3-216ENST00000573936 LMO2P25791 158 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 EEF1GP26641 437 aaKnown RBP11.76□□□□□ -0.53
CHD3-216ENST00000573936 ASPAP45381 313 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 EPHB3P54753 998 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 MYL5Q02045 173 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 KCNJ12Q14500 433 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 ZSCAN23Q3MJ62 389 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 MGAT5BQ3V5L5 792 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 IQCEQ6IPM2 695 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 C11orf57Q6ZUT1 292 aaPredicted RBP11.76□□□□□ -0.53
CHD3-216ENST00000573936 SPATA2LQ8IUW3 424 aaPredicted RBP11.76□□□□□ -0.53
CHD3-216ENST00000573936 ATAD1Q8NBU5 361 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 EHBP1Q8NDI1 1231 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 ANKRD20A12PQ8NF67 263 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 ZNF707Q96C28 371 aaPredicted RBP11.76□□□□□ -0.53
CHD3-216ENST00000573936 ZNF512Q96ME7 567 aaPredicted RBP11.76□□□□□ -0.53
CHD3-216ENST00000573936 NT5C1BQ96P26 610 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 BPIFA3Q9BQP9 254 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 TUBGCP2Q9BSJ2 902 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 DNAJC25Q9H1X3 360 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 WDR6Q9NNW5 1121 aaKnown RBP11.76□□□□□ -0.53
CHD3-216ENST00000573936 ABI2Q9NYB9 513 aaPredicted RBP11.76□□□□□ -0.53
CHD3-216ENST00000573936 NR2E1Q9Y466 385 aa11.76□□□□□ -0.53
CHD3-216ENST00000573936 PLXNA3P51805 1871 aa11.75□□□□□ -0.53
CHD3-216ENST00000573936 MYBPHLA2RUH7 354 aa11.75□□□□□ -0.53
CHD3-216ENST00000573936 GTPBP10A4D1E9 387 aaKnown RBP11.75□□□□□ -0.53
CHD3-216ENST00000573936 VNN2O95498 520 aa11.75□□□□□ -0.53
CHD3-216ENST00000573936 CAVIN2O95810 425 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms