RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 PPP4R3AQ6IN85 833 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 LRRC55Q6ZSA7 311 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 FAM214BQ7L5A3 538 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 MRPL43Q8N983 215 aaKnown RBP10.3□□□□□ -0.76
CIITA-208ENST00000572665 CNNM3Q8NE01 707 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 ETNPPLQ8TBG4 499 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 PSPC1Q8WXF1 523 aaKnown RBP10.3□□□□□ -0.76
CIITA-208ENST00000572665 SUSD6Q92537 303 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 MRFAP1L1Q96HT8 127 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 RIPOR3Q96MK2 946 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 NLRP4Q96MN2 994 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 FAM193BQ96PV7 902 aaPredicted RBP10.3□□□□□ -0.76
CIITA-208ENST00000572665 FDXACB1Q9BRP7 624 aaPredicted RBP10.3□□□□□ -0.76
CIITA-208ENST00000572665 CYP26B1Q9NR63 512 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 TPX2Q9ULW0 747 aaKnown RBP10.3□□□□□ -0.76
CIITA-208ENST00000572665 PIN4Q9Y237 131 aaKnown RBP10.3□□□□□ -0.76
CIITA-208ENST00000572665 TMEM221A6NGB7 291 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 M0R296 226 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 ADAMTS3O15072 1205 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 PDPK1O15530 556 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 CCNT1O60563 726 aaKnown RBP10.29□□□□□ -0.76
CIITA-208ENST00000572665 ZNF623O75123 536 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 ZC3H11AO75152 810 aaKnown RBP eCLIP10.29□□□□□ -0.76
CIITA-208ENST00000572665 H2AFB1P0C5Y9 115 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 H2AFB2P0C5Z0 115 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 MTHFRP42898 656 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 SIGLEC14Q08ET2 396 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 CLLU1OSQ5K130 101 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 B3GNT9Q6UX72 402 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 SRGAP1Q7Z6B7 1085 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 HACE1Q8IYU2 909 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 ZNF668Q96K58 619 aaPredicted RBP10.29□□□□□ -0.76
CIITA-208ENST00000572665 CEP170P1Q96L14 293 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 FBXL18Q96ME1 805 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 CCDC43Q96MW1 224 aaKnown RBP10.29□□□□□ -0.76
CIITA-208ENST00000572665 ASPNQ9BXN1 380 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 UBN1Q9NPG3 1134 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 DPP7Q9UHL4 492 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 SSX2IPQ9Y2D8 614 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 COL4A3BPQ9Y5P4 624 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 CNTNAP2Q9UHC6 1331 aa10.29□□□□□ -0.76
CIITA-208ENST00000572665 C2orf71A6NGG8 1288 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 FAM170BA6NMN3 283 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 ERLIN2O94905 339 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 CXCL14O95715 111 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 TP53P04637 393 aaPredicted RBP10.28□□□□□ -0.76
CIITA-208ENST00000572665 F13BP05160 661 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 FGFR4P22455 802 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 ANAPC15P60006 121 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 KCNC3Q14003 757 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 MXD4Q14582 209 aaPredicted RBP10.28□□□□□ -0.76
CIITA-208ENST00000572665 EPHA7Q15375 998 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 PTPN21Q16825 1174 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 NOMO2Q5JPE7 1267 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 ATAT1Q5SQI0 421 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 AXDND1Q5T1B0 1012 aaPredicted RBP10.28□□□□□ -0.76
CIITA-208ENST00000572665 ANO5Q75V66 913 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 ZNF765Q7L2R6 523 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 DDX53Q86TM3 631 aaKnown RBP10.28□□□□□ -0.76
CIITA-208ENST00000572665 C4orf19Q8IY42 314 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 UBALD2Q8IYN6 164 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 FBXL6Q8N531 539 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 COX4I2Q96KJ9 171 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 PHF20Q9BVI0 1012 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 MKRN2Q9H000 416 aaKnown RBP10.28□□□□□ -0.76
CIITA-208ENST00000572665 S1PR5Q9H228 398 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 ADAM7Q9H2U9 754 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 KCNMB3Q9NPA1 279 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 AGPAT5Q9NUQ2 364 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 FAM86C1Q9NVL1 165 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 HCFC2Q9Y5Z7 792 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 IRAK3Q9Y616 596 aa10.28□□□□□ -0.76
CIITA-208ENST00000572665 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.27□□□□□ -0.77
CIITA-208ENST00000572665 HIDE1A8MVS5 230 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 EDIL3O43854 480 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 ALDH2P05091 517 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 CTSAP10619 480 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 AXLP30530 894 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 YWHABP31946 246 aaKnown RBP10.27□□□□□ -0.77
CIITA-208ENST00000572665 KRT2P35908 639 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 PBX3P40426 434 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 NHLH1Q02575 133 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 SCRN1Q12765 414 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 DRP2Q13474 957 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 TRIM29Q14134 588 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 TFDP1Q14186 410 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 CYP27C1Q4G0S4 372 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 PIK3AP1Q6ZUJ8 805 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 VPS52Q8N1B4 723 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 VN1R2Q8NFZ6 395 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 GJA10Q969M2 543 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 CCDC51Q96ER9 411 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 IGSF21Q96ID5 467 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 HEXIM2Q96MH2 286 aaKnown RBP10.27□□□□□ -0.77
CIITA-208ENST00000572665 CEP89Q96ST8 783 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 SPOCK3Q9BQ16 436 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 TMEM175Q9BSA9 504 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 ZBP1Q9H171 429 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 DHX33Q9H6R0 707 aaKnown RBP10.27□□□□□ -0.77
CIITA-208ENST00000572665 RSAD1Q9HA92 442 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms