RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 C2orf15Q8WU43 125 aaKnown RBP8.71□□□□□ -1.02
VPS53-214ENST00000572607 FGF13Q92913 245 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 CCDC127Q96BQ5 260 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 CGRRF1Q99675 332 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 CORO1BQ9BR76 489 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 ASAH2Q9NR71 780 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 INTS13Q9NVM9 706 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 RMND1Q9NWS8 449 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 HCFC1R1Q9NWW0 138 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 DNMT3BQ9UBC3 853 aaKnown RBP8.71□□□□□ -1.02
VPS53-214ENST00000572607 FCF1Q9Y324 198 aaKnown RBP8.71□□□□□ -1.02
VPS53-214ENST00000572607 YIPF1Q9Y548 306 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 MTMR11A4FU01 709 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 PDXKO00764 312 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 ST8SIA5O15466 376 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 N4BP1O75113 896 aaKnown RBP8.7□□□□□ -1.02
VPS53-214ENST00000572607 PHACTR2O75167 634 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 FGF19O95750 216 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 AVPP01185 164 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 MYL4P12829 197 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 AP3M2P53677 418 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 WNT7BP56706 349 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 CYP24A1Q07973 514 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 DUSP4Q13115 394 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 BIRC3Q13489 604 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 PSMD6Q15008 389 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 NFE2Q16621 373 aaPredicted RBP8.7□□□□□ -1.02
VPS53-214ENST00000572607 MGAT5BQ3V5L5 792 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 SLC39A12Q504Y0 691 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 WSCD1Q658N2 575 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 CENPPQ6IPU0 288 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 BRICD5Q6PL45 260 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 ADGRF2Q8IZF7 708 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 TOP6BLQ8N6T0 577 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 KIAA0895Q8NCT3 520 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 OR10T2Q8NGX3 314 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 ITFG1Q8TB96 612 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 SPATA18Q8TC71 538 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 SPPL2BQ8TCT7 592 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 ING5Q8WYH8 240 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 HPDLQ96IR7 371 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 GCNAQ96QF7 691 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 SEPT5Q99719 369 aaPredicted RBP8.7□□□□□ -1.02
VPS53-214ENST00000572607 ZCWPW1Q9H0M4 648 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 GOLPH3LQ9H4A5 285 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 AVENQ9NQS1 362 aaPredicted RBP8.7□□□□□ -1.02
VPS53-214ENST00000572607 TOR4AQ9NXH8 423 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 GDE1Q9NZC3 331 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 HSFX1Q9UBD0 423 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 DUSP12Q9UNI6 340 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 FRMD4BQ9Y2L6 1034 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 SNX9Q9Y5X1 595 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 NUMBLQ9Y6R0 609 aa8.7□□□□□ -1.02
VPS53-214ENST00000572607 MICAL2O94851 1124 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 RHOBTB3O94955 611 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 SMC2O95347 1197 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 NR3C1P04150 777 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 SRFP11831 508 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 RPL13P26373 211 aaKnown RBP8.69□□□□□ -1.02
VPS53-214ENST00000572607 PCSK1P29120 753 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 ANP32AP39687 249 aaKnown RBP8.69□□□□□ -1.02
VPS53-214ENST00000572607 LHX1P48742 406 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 TNNC1P63316 161 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 DPYDQ12882 1025 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 HTR4Q13639 388 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 KCNB1Q14721 858 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 DPH6Q7L8W6 267 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 TRAPPC11Q7Z392 1133 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 SLC9A9Q8IVB4 645 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 NPAS3Q8IXF0 933 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 SLC44A3Q8N4M1 653 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 OR5B17Q8NGF7 314 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 RSAD2Q8WXG1 361 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 MCRS1Q96EZ8 462 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 BORCS6Q96GS4 357 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 MMS19Q96T76 1030 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 PRRX2Q99811 253 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 ACBD6Q9BR61 282 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 GTPBP4Q9BZE4 634 aaKnown RBP8.69□□□□□ -1.02
VPS53-214ENST00000572607 GDAP2Q9NXN4 497 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 DDX43Q9NXZ2 648 aaKnown RBP8.69□□□□□ -1.02
VPS53-214ENST00000572607 ABI2Q9NYB9 513 aaPredicted RBP8.69□□□□□ -1.02
VPS53-214ENST00000572607 ASB3Q9Y575 518 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 PCDHB5Q9Y5E4 795 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 VWA8A3KMH1 1905 aa8.69□□□□□ -1.02
VPS53-214ENST00000572607 PDCD11Q14690 1871 aaKnown RBP8.68□□□□□ -1.02
VPS53-214ENST00000572607 C2orf16Q68DN1 1984 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 FANCMQ8IYD8 2048 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 PRR23AA6NEV1 266 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 ANHXE9PGG2 379 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 H0Y858 1186 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 NARSO43776 548 aaKnown RBP8.68□□□□□ -1.02
VPS53-214ENST00000572607 KINO60870 393 aaKnown RBP8.68□□□□□ -1.02
VPS53-214ENST00000572607 KRT13P13646 458 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 CEBPBP17676 345 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 ATICP31939 592 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 PFKPQ01813 784 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 FAM160A1Q05DH4 1040 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 MAPRE1Q15691 268 aaKnown RBP8.68□□□□□ -1.02
VPS53-214ENST00000572607 SLC5A9Q2M3M2 681 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms