RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 MSANTD3Q96H12 275 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 SEPT5Q99719 369 aaPredicted RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 CBWD1Q9BRT8 395 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 SLITRK6Q9H5Y7 841 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 C8orf33Q9H7E9 229 aaPredicted RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 FBRSL1Q9HCM7 1045 aaKnown RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 POLR3BQ9NW08 1133 aaPredicted RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 TBC1D7Q9P0N9 293 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 NCDNQ9UBB6 729 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 STK17AQ9UEE5 414 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 L1RE1Q9UN81 338 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 NME7Q9Y5B8 376 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 MORC2Q9Y6X9 1032 aaPredicted RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 ASCC3Q8N3C0 2202 aaKnown RBP7.24□□□□□ -1.25
VPS53-213ENST00000572334 USP24Q9UPU5 2620 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 VPS37CA5D8V6 355 aaPredicted RBP7.24□□□□□ -1.25
VPS53-213ENST00000572334 GOLGA8IPA6NC78 632 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 GOLGA8JA6NMD2 632 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 GABRDO14764 452 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 EXTL3O43909 919 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 ITGB3P05106 788 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 TPM2P07951 284 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 SYT1P21579 422 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 GARTP22102 1010 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 CDC25CP30307 473 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 POLR2BP30876 1174 aaKnown RBP7.24□□□□□ -1.25
VPS53-213ENST00000572334 HOXA6P31267 233 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 ABCD1P33897 745 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 KPNA1P52294 538 aaPredicted RBP7.24□□□□□ -1.25
VPS53-213ENST00000572334 SPEM2Q0P670 501 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 TXNDC8Q6A555 127 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 TRIM68Q6AZZ1 485 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 FSTL4Q6MZW2 842 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 ITIH5Q86UX2 942 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 NT5DC4Q86YG4 428 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 CMTM8Q8IZV2 173 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 CELF5Q8N6W0 485 aaKnown RBP7.24□□□□□ -1.25
VPS53-213ENST00000572334 KRI1Q8N9T8 703 aaKnown RBP7.24□□□□□ -1.25
VPS53-213ENST00000572334 CSGALNACT1Q8TDX6 532 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 C2orf15Q8WU43 125 aaKnown RBP7.24□□□□□ -1.25
VPS53-213ENST00000572334 LEO1Q8WVC0 666 aaPredicted RBP7.24□□□□□ -1.25
VPS53-213ENST00000572334 EZH1Q92800 747 aaPredicted RBP7.24□□□□□ -1.25
VPS53-213ENST00000572334 USP28Q96RU2 1077 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 SLC22A12Q96S37 553 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 FAM213AQ9BRX8 229 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 PI4K2AQ9BTU6 479 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 OLFML3Q9NRN5 406 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 GKN1Q9NS71 199 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 ABI2Q9NYB9 513 aaPredicted RBP7.24□□□□□ -1.25
VPS53-213ENST00000572334 SEL1LQ9UBV2 794 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 DSEQ9UL01 958 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 AGAP1Q9UPQ3 857 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 MTMR6Q9Y217 621 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.24□□□□□ -1.25
VPS53-213ENST00000572334 ZFHX4Q86UP3 3567 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 PLXND1Q9Y4D7 1925 aa7.24□□□□□ -1.25
VPS53-213ENST00000572334 ANTXRLA6NF34 631 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 PCNX2A6NKB5 2137 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 NOL4O94818 638 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 PRPF6O94906 941 aaKnown RBP7.23□□□□□ -1.25
VPS53-213ENST00000572334 IL18RAPO95256 599 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 FGF19O95750 216 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 RETP07949 1114 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 ARSAP15289 507 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 GAP43P17677 238 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 ACAT1P24752 427 aaKnown RBP7.23□□□□□ -1.25
VPS53-213ENST00000572334 CYP2F1P24903 491 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 NRLP54845 237 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 ZXDBP98169 803 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 TFAMQ00059 246 aaKnown RBP7.23□□□□□ -1.25
VPS53-213ENST00000572334 SMARCB1Q12824 385 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 LRRC32Q14392 662 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 SLC39A14Q15043 492 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 POSTNQ15063 836 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 E2F4Q16254 413 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 DDR2Q16832 855 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 SOWAHAQ2M3V2 549 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 SV2CQ496J9 727 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 TMEM196Q5HYL7 178 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 INTS6LQ5JSJ4 861 aaKnown RBP7.23□□□□□ -1.25
VPS53-213ENST00000572334 DGKKQ5KSL6 1271 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 RRAGBQ5VZM2 374 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 LMBRD2Q68DH5 695 aaPredicted RBP7.23□□□□□ -1.25
VPS53-213ENST00000572334 LAIR1Q6GTX8 287 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 FAM171BQ6P995 826 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 C1orf228Q6PIY5 440 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 SV2BQ7L1I2 683 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 MON1AQ86VX9 555 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 METTL23Q86XA0 190 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 YAF2Q8IY57 180 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 THEM5Q8N1Q8 247 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 GPR161Q8N6U8 529 aaKnown RBP7.23□□□□□ -1.25
VPS53-213ENST00000572334 MAB21L3Q8N8X9 362 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 OR5B17Q8NGF7 314 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 RASSF8Q8NHQ8 419 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 FAM200AQ8TCP9 573 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 KBTBD7Q8WVZ9 684 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 HPS3Q969F9 1004 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 MYRFLQ96LU7 910 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms