RNA–Protein interactions for RNA: ENST00000571263.2

CDRT1-206, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best)

Gene CDRT1, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-206ENST00000571263 CACNG4Q9UBN1 327 aa12.66□□□□□ -0.38
CDRT1-206ENST00000571263 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.66□□□□□ -0.38
CDRT1-206ENST00000571263 MRPL42Q9Y6G3 142 aaKnown RBP12.66□□□□□ -0.38
CDRT1-206ENST00000571263 SCN1AP35498 2009 aa12.66□□□□□ -0.38
CDRT1-206ENST00000571263 BTNL10A8MVZ5 291 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 O00370 1275 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 PJA2O43164 708 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 EFEMP2O95967 443 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 FTLP02792 175 aaPredicted RBP12.65□□□□□ -0.38
CDRT1-206ENST00000571263 SOD2P04179 222 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 ITGB1P05556 798 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 CALB1P05937 261 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 RB1P06400 928 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 TMEM253P0C7T8 217 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 LMO2P25791 158 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 PLCB3Q01970 1234 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 CENPCQ03188 943 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 MRPL58Q14197 206 aaKnown RBP12.65□□□□□ -0.38
CDRT1-206ENST00000571263 MTF1Q14872 753 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 IFI16Q16666 785 aaKnown RBP12.65□□□□□ -0.38
CDRT1-206ENST00000571263 INTS6LQ5JSJ4 861 aaKnown RBP12.65□□□□□ -0.38
CDRT1-206ENST00000571263 KIAA1841Q6NSI8 718 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 FAM171BQ6P995 826 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 TOGARAM2Q6ZUX3 1019 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 OSTM1Q86WC4 334 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 PHF13Q86YI8 300 aaPredicted RBP12.65□□□□□ -0.38
CDRT1-206ENST00000571263 RNF10Q8N5U6 811 aaKnown RBP12.65□□□□□ -0.38
CDRT1-206ENST00000571263 ANKRD52Q8NB46 1076 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 LNX1Q8TBB1 728 aaPredicted RBP12.65□□□□□ -0.38
CDRT1-206ENST00000571263 HASPINQ8TF76 798 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 C2orf15Q8WU43 125 aaKnown RBP12.65□□□□□ -0.38
CDRT1-206ENST00000571263 SLC20A1Q8WUM9 679 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 CTNNBL1Q8WYA6 563 aaPredicted RBP12.65□□□□□ -0.38
CDRT1-206ENST00000571263 TFAP2BQ92481 460 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 RABGGTAQ92696 567 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 RNPC3Q96LT9 517 aaKnown RBP12.65□□□□□ -0.38
CDRT1-206ENST00000571263 UBXN6Q9BZV1 441 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 CYLDQ9NQC7 956 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 STRIP2Q9ULQ0 834 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 PYCARDQ9ULZ3 195 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 NENFQ9UMX5 172 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 BACE2Q9Y5Z0 518 aa12.65□□□□□ -0.38
CDRT1-206ENST00000571263 A0A0A6YYK5 440 aaPredicted RBP12.64□□□□□ -0.39
CDRT1-206ENST00000571263 ESPNB1AK53 854 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 KIF2AO00139 706 aaPredicted RBP12.64□□□□□ -0.39
CDRT1-206ENST00000571263 BRD2P25440 801 aaKnown RBP12.64□□□□□ -0.39
CDRT1-206ENST00000571263 BMP8BP34820 402 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 ACADSBP45954 432 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 BCAT1P54687 386 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 NOMO3P69849 1222 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 GPC5P78333 572 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 CYP27A1Q02318 531 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 UBE3AQ05086 875 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 C1QBPQ07021 282 aaKnown RBP12.64□□□□□ -0.39
CDRT1-206ENST00000571263 TCEAL1Q15170 157 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 CTXN3Q4LDR2 81 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 ARHGAP29Q52LW3 1261 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 VARS2Q5ST30 1063 aaKnown RBP12.64□□□□□ -0.39
CDRT1-206ENST00000571263 LIN9Q5TKA1 542 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 CEP57Q86XR8 500 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 RHOT2Q8IXI1 618 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 RNF168Q8IYW5 571 aaPredicted RBP12.64□□□□□ -0.39
CDRT1-206ENST00000571263 FUBP3Q96I24 572 aaKnown RBP eCLIP12.64□□□□□ -0.39
CDRT1-206ENST00000571263 PCDHB18PQ96TA0 734 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 HERC2P3Q9BVR0 1158 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 GPR62Q9BZJ7 368 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 UBE2OQ9C0C9 1292 aaKnown RBP12.64□□□□□ -0.39
CDRT1-206ENST00000571263 ACP6Q9NPH0 428 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.64□□□□□ -0.39
CDRT1-206ENST00000571263 CHST7Q9NS84 486 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 WDR35Q9P2L0 1181 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 MYO1AQ9UBC5 1043 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 HMGXB4Q9UGU5 601 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 LCMT1Q9UIC8 334 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 TSPAN16Q9UKR8 245 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 MAFFQ9ULX9 164 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 LZTS1Q9Y250 596 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 PCDHA11Q9Y5I1 949 aa12.64□□□□□ -0.39
CDRT1-206ENST00000571263 TIMM13Q9Y5L4 95 aaPredicted RBP12.64□□□□□ -0.39
CDRT1-206ENST00000571263 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.63□□□□□ -0.39
CDRT1-206ENST00000571263 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.63□□□□□ -0.39
CDRT1-206ENST00000571263 NT5C1B-RDH14C9J2C7 533 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 I3L4J1 428 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 ZNF263O14978 683 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 MICAL2O94851 1124 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 IGFBP6P24592 240 aaPredicted RBP12.63□□□□□ -0.39
CDRT1-206ENST00000571263 TKTP29401 623 aaKnown RBP12.63□□□□□ -0.39
CDRT1-206ENST00000571263 BMPR1AP36894 532 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 GPD2P43304 727 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 RGS19P49795 217 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 BST2Q10589 180 aaKnown RBP12.63□□□□□ -0.39
CDRT1-206ENST00000571263 PPP1R26Q5T8A7 1209 aaPredicted RBP12.63□□□□□ -0.39
CDRT1-206ENST00000571263 ERICH1Q86X53 443 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 ZDHHC17Q8IUH5 632 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 C12orf29Q8N999 325 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 ACRBPQ8NEB7 543 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 PIK3R5Q8WYR1 880 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 HSFY1Q96LI6 401 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 GDF15Q99988 308 aa12.63□□□□□ -0.39
CDRT1-206ENST00000571263 DESI2Q9BSY9 194 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms