RNA–Protein interactions for RNA: ENST00000571190.1

CIITA-206, Transcript of class II major histocompatibility complex transactivator, humanhuman

Gene CIITA, Length 479 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-206ENST00000571190 ZNF560Q96MR9 790 aa18.9■□□□□ 0.62
CIITA-206ENST00000571190 GCNAQ96QF7 691 aa18.9■□□□□ 0.62
CIITA-206ENST00000571190 PANK2Q9BZ23 570 aa18.9■□□□□ 0.62
CIITA-206ENST00000571190 SIX4Q9UIU6 781 aa18.9■□□□□ 0.62
CIITA-206ENST00000571190 EXOC7Q9UPT5 735 aa18.9■□□□□ 0.62
CIITA-206ENST00000571190 HCRTO43612 131 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 EXTL3O43909 919 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 TADA3O75528 432 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 RETP07949 1114 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 GARTP22102 1010 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 ACAT1P24752 427 aaKnown RBP18.89■□□□□ 0.61
CIITA-206ENST00000571190 HOXA6P31267 233 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 SIM2Q14190 667 aaPredicted RBP18.89■□□□□ 0.61
CIITA-206ENST00000571190 TAF12Q16514 161 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 DDR2Q16832 855 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 TXNDC8Q6A555 127 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 HEATR6Q6AI08 1181 aaKnown RBP18.89■□□□□ 0.61
CIITA-206ENST00000571190 TRIM68Q6AZZ1 485 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 PRR23BQ6ZRT6 265 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 SYNPOQ8N3V7 929 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 LEO1Q8WVC0 666 aaPredicted RBP18.89■□□□□ 0.61
CIITA-206ENST00000571190 USP28Q96RU2 1077 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 ACBD6Q9BR61 282 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 PDE11AQ9HCR9 933 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 THG1LQ9NWX6 298 aaKnown RBP18.89■□□□□ 0.61
CIITA-206ENST00000571190 GDAP2Q9NXN4 497 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 DDX43Q9NXZ2 648 aaKnown RBP18.89■□□□□ 0.61
CIITA-206ENST00000571190 RBAKQ9NYW8 714 aaPredicted RBP18.89■□□□□ 0.61
CIITA-206ENST00000571190 RAB23Q9ULC3 237 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 PCDHB13Q9Y5F0 798 aa18.89■□□□□ 0.61
CIITA-206ENST00000571190 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.89■□□□□ 0.61
CIITA-206ENST00000571190 MORC2Q9Y6X9 1032 aaPredicted RBP18.89■□□□□ 0.61
CIITA-206ENST00000571190 PRPF40AO75400 957 aaKnown RBP18.88■□□□□ 0.61
CIITA-206ENST00000571190 IDEP14735 1019 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 PDCP20941 246 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 SDHBP21912 280 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 CYP2F1P24903 491 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 TSPY1Q01534 308 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 RUNX3Q13761 415 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 SLC39A14Q15043 492 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 INTS6LQ5JSJ4 861 aaKnown RBP18.88■□□□□ 0.61
CIITA-206ENST00000571190 FSTL4Q6MZW2 842 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 MON1AQ86VX9 555 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 CSGALNACT2Q8N6G5 542 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 LRRC52Q8N7C0 313 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 EBF3Q9H4W6 596 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 PCIF1Q9H4Z3 704 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 TDP1Q9NUW8 608 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 ZMYM5Q9UJ78 669 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 GTF3C4Q9UKN8 822 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 MAGED2Q9UNF1 606 aaPredicted RBP18.88■□□□□ 0.61
CIITA-206ENST00000571190 CEP250Q9BV73 2442 aa18.88■□□□□ 0.61
CIITA-206ENST00000571190 DCDC2BA2VCK2 349 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 GABRDO14764 452 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 PRPF6O94906 941 aaKnown RBP18.87■□□□□ 0.61
CIITA-206ENST00000571190 LDHAP00338 332 aaKnown RBP18.87■□□□□ 0.61
CIITA-206ENST00000571190 CSH1P0DML2 217 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 CSH2P0DML3 217 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 ARSAP15289 507 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 CNR2P34972 360 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 AVPR1AP37288 418 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 NFE2Q16621 373 aaPredicted RBP18.87■□□□□ 0.61
CIITA-206ENST00000571190 TMEM196Q5HYL7 178 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 CCDC73Q6ZRK6 1079 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 TICRRQ7Z2Z1 1910 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 LIMS2Q7Z4I7 341 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 WDR5BQ86VZ2 330 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 GLIS3Q8NEA6 775 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 FBRSL1Q9HCM7 1045 aaKnown RBP18.87■□□□□ 0.61
CIITA-206ENST00000571190 ABCB6Q9NP58 842 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 PANK4Q9NVE7 773 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 ITGA11Q9UKX5 1188 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 CDV3Q9UKY7 258 aaKnown RBP18.87■□□□□ 0.61
CIITA-206ENST00000571190 MTMR6Q9Y217 621 aa18.87■□□□□ 0.61
CIITA-206ENST00000571190 TSC2P49815 1807 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 PTPRJQ12913 1337 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 SOBPA7XYQ1 873 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 TULP1O00294 542 aaPredicted RBP18.86■□□□□ 0.61
CIITA-206ENST00000571190 TRDMT1O14717 391 aaKnown RBP18.86■□□□□ 0.61
CIITA-206ENST00000571190 HUS1O60921 280 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 LRP3O75074 770 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 NOL4O94818 638 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 CENPBP07199 599 aaPredicted RBP18.86■□□□□ 0.61
CIITA-206ENST00000571190 DDX6P26196 483 aaKnown RBP eCLIP18.86■□□□□ 0.61
CIITA-206ENST00000571190 TXLNAP40222 546 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 BFSP1Q12934 665 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 SOWAHAQ2M3V2 549 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 LMBRD2Q68DH5 695 aaPredicted RBP18.86■□□□□ 0.61
CIITA-206ENST00000571190 NAIF1Q69YI7 327 aaPredicted RBP18.86■□□□□ 0.61
CIITA-206ENST00000571190 SYCP3Q8IZU3 236 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 TMEM86AQ8N2M4 240 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 CACTINQ8WUQ7 758 aaKnown RBP18.86■□□□□ 0.61
CIITA-206ENST00000571190 MYRFLQ96LU7 910 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 SLC22A12Q96S37 553 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 RTKNQ9BST9 563 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 MTMR12Q9C0I1 747 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 SEMA4GQ9NTN9 838 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 POLR3BQ9NW08 1133 aaPredicted RBP18.86■□□□□ 0.61
CIITA-206ENST00000571190 SNX9Q9Y5X1 595 aa18.86■□□□□ 0.61
CIITA-206ENST00000571190 HOXD13P35453 343 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 218.1 ms