RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	YARS	P54577	528 aa	Known RBP	11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	BCAR1	P56945	870 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	ANO7	Q6IWH7	933 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	FOXR2	Q6PJQ5	311 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	TRIM72	Q6ZMU5	477 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	ZFPM1	Q8IX07	1006 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	OPTN	Q96CV9	577 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	OXNAD1	Q96HP4	312 aa	Predicted RBP	11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	ADPGK	Q9BRR6	497 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	POLL	Q9UGP5	575 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	IVNS1ABP	Q9Y6Y0	642 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	SPATA31A1	Q5TZJ5	1347 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	MYH7B	A7E2Y1	1941 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	SLC26A4	O43511	780 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	GPC4	O75487	556 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	USP1	O94782	785 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	SESN2	P58004	480 aa	Predicted RBP	11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	RHBDL3	P58872	404 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	MORF4L2	Q15014	288 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430		Q4G0T1	1027 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	SLC27A3	Q5K4L6	730 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	SLC10A5	Q5PT55	438 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	PPP1R15B	Q5SWA1	713 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	MOXD1	Q6UVY6	613 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	ZCCHC9	Q8N567	271 aa	Known RBP	11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	C7orf31	Q8N865	590 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	CNKSR1	Q969H4	720 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	TMEM143	Q96AN5	459 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	HEXIM2	Q96MH2	286 aa	Known RBP	11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	SAR1A	Q9NR31	198 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	SLC17A7	Q9P2U7	560 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	SLC24A2	Q9UI40	661 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	TBX20	Q9UMR3	447 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	GLI3	P10071	1580 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	KAT6A	Q92794	2004 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	COL1A1	P02452	1464 aa	Predicted RBP	11.93	□□□□□ -0.5
CLN3-238	ENST00000569430		A6NJR5	290 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	SUPT3H	O75486	399 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	PGM3	O95394	542 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	TYK2	P29597	1187 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	FAAP100	Q0VG06	881 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	EFTUD2	Q15029	972 aa	Known RBP eCLIP	11.93	□□□□□ -0.5	3e-6	■■■■□ 22
CLN3-238	ENST00000569430	PRR5L	Q6MZQ0	368 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	C4orf50	Q6ZRC1	276 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	TRIM50	Q86XT4	487 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	EFCAB3	Q8N7B9	438 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	EXD1	Q8NHP7	514 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	ACER1	Q8TDN7	264 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	CLPTM1L	Q96KA5	538 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	PPP1R16B	Q96T49	567 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	SERPINI1	Q99574	410 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	TMEM109	Q9BVC6	243 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	KCND2	Q9NZV8	630 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	THEG	Q9P2T0	379 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	PACSIN3	Q9UKS6	424 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	COL4A1	P02462	1669 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	DCC	P43146	1447 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	PEX11A	O75192	247 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	ENO3	P13929	434 aa	Predicted RBP	11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	ELK3	P41970	407 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	YWHAE	P62258	255 aa	Known RBP	11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	ESRRG	P62508	458 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	FAM182A	Q5T1J6	154 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	FAM102A	Q5T9C2	384 aa	Predicted RBP	11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	GPAT2	Q6NUI2	795 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	TMPRSS6	Q8IU80	811 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	FAM149B1	Q96BN6	582 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	CNBD2	Q96M20	576 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	SYT15	Q9BQS2	421 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	ZNF341	Q9BYN7	854 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	POLR3F	Q9H1D9	316 aa	Predicted RBP	11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	DDX56	Q9NY93	547 aa	Known RBP	11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	ADA2	Q9NZK5	511 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	COMMD10	Q9Y6G5	202 aa		11.93	□□□□□ -0.5
CLN3-238	ENST00000569430	DDTL	A6NHG4	134 aa	Predicted RBP	11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	GSC2	O15499	205 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	PSTPIP1	O43586	416 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	ALDH1B1	P30837	517 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	NCOA4	Q13772	614 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	PRKG1	Q13976	671 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	TFDP2	Q14188	446 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	TCHHL1	Q5QJ38	904 aa	Predicted RBP	11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	CWF19L1	Q69YN2	538 aa	Known RBP	11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	EEPD1	Q7L9B9	569 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	ZNF354C	Q86Y25	554 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	EMC1	Q8N766	993 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	DTNBP1	Q96EV8	351 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	AGBL1	Q96MI9	1066 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	ADAM7	Q9H2U9	754 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	TBC1D22B	Q9NU19	505 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	EPS15L1	Q9UBC2	864 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	SCAF8	Q9UPN6	1271 aa	Known RBP	11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	PCDHA2	Q9Y5H9	948 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430		F8VP50	259 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	XPO1	O14980	1071 aa	Known RBP	11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	TAS2R40	P59535	323 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	CDK16	Q00536	496 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	HYI	Q5T013	277 aa		11.92	□□□□□ -0.5

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