RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 NAIF1Q69YI7 327 aaPredicted RBP16.73■□□□□ 0.27
NME3-211ENST00000568561 TXNDC8Q6A555 127 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 FSTL4Q6MZW2 842 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 ZNF720Q7Z2F6 126 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 BRAPQ7Z569 592 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 TTC16Q8NEE8 873 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 NETO1Q8TDF5 533 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 C2orf15Q8WU43 125 aaKnown RBP16.73■□□□□ 0.27
NME3-211ENST00000568561 USP13Q92995 863 aaPredicted RBP16.73■□□□□ 0.27
NME3-211ENST00000568561 ZNF560Q96MR9 790 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 FAM213AQ9BRX8 229 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 CCSER1Q9C0I3 900 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 ST6GALNAC4Q9H4F1 302 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 THG1LQ9NWX6 298 aaKnown RBP16.73■□□□□ 0.27
NME3-211ENST00000568561 PCDHB5Q9Y5E4 795 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 CLIC4Q9Y696 253 aa16.73■□□□□ 0.27
NME3-211ENST00000568561 HELZP42694 1942 aaKnown RBP16.72■□□□□ 0.27
NME3-211ENST00000568561 MYMKA6NI61 221 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 SLC30A4O14863 429 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 HCRTO43612 131 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 PRPF40AO75400 957 aaKnown RBP16.72■□□□□ 0.27
NME3-211ENST00000568561 PPP1R37O75864 691 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 F11P03951 625 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 ITGB3P05106 788 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 ARSAP15289 507 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 KCNA4P22459 653 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 ABCD1P33897 745 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 DDIT3P35638 169 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 CASP5P51878 434 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 BFSP1Q12934 665 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 CSRP2Q16527 193 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 DCP1BQ8IZD4 617 aaKnown RBP16.72■□□□□ 0.27
NME3-211ENST00000568561 PDCL2Q8N4E4 241 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 NOC3LQ8WTT2 800 aaKnown RBP16.72■□□□□ 0.27
NME3-211ENST00000568561 CLIC6Q96NY7 704 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 FAM83CQ9BQN1 747 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 FGFBP2Q9BYJ0 223 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 MRPL44Q9H9J2 332 aaKnown RBP16.72■□□□□ 0.27
NME3-211ENST00000568561 L1RE1Q9UN81 338 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 AGAP1Q9UPQ3 857 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 USP24Q9UPU5 2620 aa16.72■□□□□ 0.27
NME3-211ENST00000568561 GOLGA8IPA6NC78 632 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 GOLGA8JA6NMD2 632 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 LRP3O75074 770 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 IL18RAPO95256 599 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 CNR2P34972 360 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 TSPY1Q01534 308 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 RUNX3Q13761 415 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 PTPAQ15257 358 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 DDR2Q16832 855 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 PPM1JQ5JR12 505 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 FAM173BQ6P4H8 233 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 WDR5BQ86VZ2 330 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 OSTM1Q86WC4 334 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 C1orf127Q8N9H9 656 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 HVCN1Q96D96 273 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 STRA6Q9BX79 667 aa16.71■□□□□ 0.27
NME3-211ENST00000568561 FBXO2Q9UK22 296 aaPredicted RBP16.71■□□□□ 0.27
NME3-211ENST00000568561 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.71■□□□□ 0.27
NME3-211ENST00000568561 CEP295Q9C0D2 2601 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 AXIN1O15169 862 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 TADA3O75528 432 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 GCNT3O95395 438 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 EGFP01133 1207 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 CYP2F1P24903 491 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 CEBPZQ03701 1054 aaKnown RBP16.7■□□□□ 0.26
NME3-211ENST00000568561 SMARCB1Q12824 385 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 SF3A2Q15428 464 aaKnown RBP16.7■□□□□ 0.26
NME3-211ENST00000568561 TMEM196Q5HYL7 178 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 L1TD1Q5T7N2 865 aaKnown RBP16.7■□□□□ 0.26
NME3-211ENST00000568561 BRSK2Q8IWQ3 736 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 SYNPOQ8N3V7 929 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 DNAJC19Q96DA6 116 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 ACCSQ96QU6 501 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 FBRSL1Q9HCM7 1045 aaKnown RBP16.7■□□□□ 0.26
NME3-211ENST00000568561 TRPC7Q9HCX4 862 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 TDP1Q9NUW8 608 aa16.7■□□□□ 0.26
NME3-211ENST00000568561 DDX43Q9NXZ2 648 aaKnown RBP16.7■□□□□ 0.26
NME3-211ENST00000568561 RBAKQ9NYW8 714 aaPredicted RBP16.7■□□□□ 0.26
NME3-211ENST00000568561 PTPRDP23468 1912 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 RNF40O75150 1001 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 KRT37O76014 449 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 ADRB1P08588 477 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 KRT19P08727 400 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 IDEP14735 1019 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 GRSF1Q12849 480 aaKnown RBP eCLIP16.69■□□□□ 0.26
NME3-211ENST00000568561 POSTNQ15063 836 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 INTS6LQ5JSJ4 861 aaKnown RBP16.69■□□□□ 0.26
NME3-211ENST00000568561 LMBRD2Q68DH5 695 aaPredicted RBP16.69■□□□□ 0.26
NME3-211ENST00000568561 KBTBD6Q86V97 674 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 MON1AQ86VX9 555 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 MRPS31Q92665 395 aaKnown RBP16.69■□□□□ 0.26
NME3-211ENST00000568561 SLC22A12Q96S37 553 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 CBWD1Q9BRT8 395 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 ARRDC1-AS1Q9H2J1 176 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 SMOC1Q9H4F8 434 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 PCIF1Q9H4Z3 704 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 STK17AQ9UEE5 414 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 CCDC39Q9UFE4 941 aa16.69■□□□□ 0.26
NME3-211ENST00000568561 GTF3C4Q9UKN8 822 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms