RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 CCDC47Q96A33 483 aaKnown RBP14.95□□□□□ -0.02
CLN3-235ENST00000568497 TIGD1Q96MW7 591 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 FBXW11Q9UKB1 542 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 LHX6Q9UPM6 363 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 IGF2RP11717 2491 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 SPEGQ15772 3267 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 ANO9A1A5B4 782 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 SHISA7A6NL88 538 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 TMEM189-UBE2V1I3L0A0 370 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 PIRO00625 290 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 MAN2B1O00754 1011 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 HRO43593 1189 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 IL18RAPO95256 599 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 MYL1P05976 194 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 SCP2P22307 547 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 HOXA9P31269 272 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 RPL9P32969 192 aaKnown RBP14.94□□□□□ -0.02
CLN3-235ENST00000568497 ABCD1P33897 745 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 CXCL12P48061 93 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 KYAT1Q16773 422 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 PABPC1LQ4VXU2 614 aaKnown RBP14.94□□□□□ -0.02
CLN3-235ENST00000568497 C1orf220Q5T0J3 134 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 ANKRD40Q6AI12 368 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 PSAPL1Q6NUJ1 521 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 ZNF687Q8N1G0 1237 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 FAM160A2Q8N612 972 aaPredicted RBP14.94□□□□□ -0.02
CLN3-235ENST00000568497 SENP8Q96LD8 212 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 UROC1Q96N76 676 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 BRD9Q9H8M2 597 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 LMAN1LQ9HAT1 526 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 DMAC2Q9NW81 257 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 CTNND2Q9UQB3 1225 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 CDY1Q9Y6F8 540 aa14.94□□□□□ -0.02
CLN3-235ENST00000568497 LRRIQ3A6PVS8 624 aaPredicted RBP14.93□□□□□ -0.02
CLN3-235ENST00000568497 ECI2O75521 394 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 AKAP3O75969 853 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 SMC2O95347 1197 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 CST3P01034 146 aaPredicted RBP14.93□□□□□ -0.02
CLN3-235ENST00000568497 POU2F2P09086 479 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 TNNI1P19237 187 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 NR2F2P24468 414 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 CNR2P34972 360 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 LILRA4P59901 499 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 FOXC1Q12948 553 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 GRM2Q14416 872 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 STPG1Q5TH74 334 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 ZNF658Q5TYW1 1059 aaPredicted RBP14.93□□□□□ -0.02
CLN3-235ENST00000568497 WSCD1Q658N2 575 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.93□□□□□ -0.02
CLN3-235ENST00000568497 OSTM1Q86WC4 334 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 GUF1Q8N442 669 aaKnown RBP14.93□□□□□ -0.02
CLN3-235ENST00000568497 KDF1Q8NAX2 398 aaPredicted RBP14.93□□□□□ -0.02
CLN3-235ENST00000568497 SPATA20Q8TB22 786 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 PIK3R5Q8WYR1 880 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 DNASE1L2Q92874 299 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 MCRS1Q96EZ8 462 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 SUSD3Q96L08 255 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 PGLYRP2Q96PD5 576 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 LPIN3Q9BQK8 851 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 PLA2G2FQ9BZM2 168 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 ARRDC1-AS1Q9H2J1 176 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 ASB7Q9H672 318 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 RXFP3Q9NSD7 469 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 INTS13Q9NVM9 706 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 HCFC1R1Q9NWW0 138 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 MRPS23Q9Y3D9 190 aaKnown RBP14.93□□□□□ -0.02
CLN3-235ENST00000568497 C2CD2Q9Y426 696 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 GREB1Q4ZG55 1949 aa14.93□□□□□ -0.02
CLN3-235ENST00000568497 SDK1Q7Z5N4 2213 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 PPP1R3GB7ZBB8 358 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 CYB561D2O14569 222 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 TM4SF5O14894 197 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 AXIN1O15169 862 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 CALUO43852 315 aaPredicted RBP14.92□□□□□ -0.02
CLN3-235ENST00000568497 SOAT2O75908 522 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 LDHAP00338 332 aaKnown RBP14.92□□□□□ -0.02
CLN3-235ENST00000568497 TMEM191BP0C7N4 346 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 SPINK2P20155 84 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 CYP3A5P20815 502 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 ACAT1P24752 427 aaKnown RBP14.92□□□□□ -0.02
CLN3-235ENST00000568497 RING1Q06587 406 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 MORC3Q14149 939 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 PSMD6Q15008 389 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 CTXN3Q4LDR2 81 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 ZCWPW2Q504Y3 356 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 LRSAM1Q6UWE0 723 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 LONP2Q86WA8 852 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 TTC9BQ8N6N2 239 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 SLC7A14Q8TBB6 771 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 FAM3CQ92520 227 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 CGRRF1Q99675 332 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 CLSTN2Q9H4D0 955 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 MTRRQ9UBK8 725 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 FBXL5Q9UKA1 691 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 PCDHB8Q9UN66 801 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 TSC2P49815 1807 aa14.92□□□□□ -0.02
CLN3-235ENST00000568497 WDR27A2RRH5 827 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 SRRM3A6NNA2 597 aaPredicted RBP14.91□□□□□ -0.02
CLN3-235ENST00000568497 PDXKO00764 312 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 NRG2O14511 850 aaPredicted RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms