RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 XYLT1Q86Y38 959 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 PGM2Q96G03 612 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 ADAMTS10Q9H324 1103 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 CDC42EP4Q9H3Q1 356 aaKnown RBP21.41■■□□□ 1.02
CLN3-230ENST00000568076 DPP3Q9NY33 737 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 ITGA11Q9UKX5 1188 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.41■■□□□ 1.02
CLN3-230ENST00000568076 LIASO43766 372 aa21.4■■□□□ 1.02
CLN3-230ENST00000568076 PSMA2P25787 234 aa21.4■■□□□ 1.02
CLN3-230ENST00000568076 KLRC2P26717 231 aa21.4■■□□□ 1.02
CLN3-230ENST00000568076 ADCY8P40145 1251 aa21.4■■□□□ 1.02
CLN3-230ENST00000568076 GSCP56915 257 aaPredicted RBP21.4■■□□□ 1.02
CLN3-230ENST00000568076 TMEM62Q0P6H9 643 aa21.4■■□□□ 1.02
CLN3-230ENST00000568076 PKNOX2Q96KN3 472 aa21.4■■□□□ 1.02
CLN3-230ENST00000568076 DDX23Q9BUQ8 820 aaKnown RBP21.4■■□□□ 1.02
CLN3-230ENST00000568076 EPN3Q9H201 632 aa21.4■■□□□ 1.02
CLN3-230ENST00000568076 PCNTO95613 3336 aa21.4■■□□□ 1.02
CLN3-230ENST00000568076 hCG_1818297A0A087WSY0 165 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 C3orf70A6NLC5 250 aaPredicted RBP21.39■■□□□ 1.02
CLN3-230ENST00000568076 ECM2O94769 699 aaPredicted RBP21.39■■□□□ 1.02
CLN3-230ENST00000568076 HOXA11P31270 313 aaPredicted RBP21.39■■□□□ 1.02
CLN3-230ENST00000568076 CETN2P41208 172 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 GRM5P41594 1212 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 CDKN2BP42772 138 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 GPD2P43304 727 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 SLC25A11Q02978 314 aaKnown RBP21.39■■□□□ 1.02
CLN3-230ENST00000568076 EMC1Q8N766 993 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 EPS8L3Q8TE67 593 aaKnown RBP21.39■■□□□ 1.02
CLN3-230ENST00000568076 KIF12Q96FN5 646 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 PWWP2AQ96N64 755 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 ADPGKQ9BRR6 497 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 TMEM109Q9BVC6 243 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 TRAIPQ9BWF2 469 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 CDHR5Q9HBB8 845 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 DNPEPQ9ULA0 475 aa21.39■■□□□ 1.02
CLN3-230ENST00000568076 TLDC2A0PJX2 215 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 LRCH4O75427 683 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 TJP3O95049 919 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 IL1R2P27930 398 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 PTPN7P35236 360 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 SEC24CP53992 1094 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 COPS2P61201 443 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 RBP5P82980 135 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 INCA1Q0VD86 236 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 BYSLQ13895 437 aaKnown RBP21.39■■□□□ 1.01
CLN3-230ENST00000568076 PRAMEF19Q5SWL8 479 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 ZNF365Q70YC5 407 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 TRMT10CQ7L0Y3 403 aaKnown RBP21.39■■□□□ 1.01
CLN3-230ENST00000568076 GLIS1Q8NBF1 620 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 FAM49AQ9H0Q0 323 aaPredicted RBP21.39■■□□□ 1.01
CLN3-230ENST00000568076 METTL5Q9NRN9 209 aaKnown RBP21.39■■□□□ 1.01
CLN3-230ENST00000568076 DDX56Q9NY93 547 aaKnown RBP21.39■■□□□ 1.01
CLN3-230ENST00000568076 ANAPC5Q9UJX4 755 aa21.39■■□□□ 1.01
CLN3-230ENST00000568076 LRRD1A4D1F6 860 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 SLC15A5A6NIM6 579 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 SMIM23A6NLE4 172 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 M0QYV0 167 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 GPR32O75388 356 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 CELF2O95319 508 aaKnown RBP21.38■■□□□ 1.01
CLN3-230ENST00000568076 NPTXRO95502 500 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 STAU1O95793 577 aaKnown RBP21.38■■□□□ 1.01
CLN3-230ENST00000568076 P4HA1P13674 534 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 CYP3A5P20815 502 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 NDST1P52848 882 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 CNGA2Q16280 664 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 TFDP3Q5H9I0 405 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 SRLQ86TD4 932 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 CCDC89Q8N998 374 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 FNIP1Q8TF40 1166 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 HEXIM2Q96MH2 286 aaKnown RBP21.38■■□□□ 1.01
CLN3-230ENST00000568076 DNAJC17Q9NVM6 304 aaKnown RBP21.38■■□□□ 1.01
CLN3-230ENST00000568076 BARX2Q9UMQ3 279 aaPredicted RBP21.38■■□□□ 1.01
CLN3-230ENST00000568076 GINS2Q9Y248 185 aa21.38■■□□□ 1.01
CLN3-230ENST00000568076 DYNC1LI2O43237 492 aaPredicted RBP21.37■■□□□ 1.01
CLN3-230ENST00000568076 VDRP11473 427 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 GABRB2P47870 512 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 IRX5P78411 483 aaPredicted RBP21.37■■□□□ 1.01
CLN3-230ENST00000568076 CAV1Q03135 178 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 ZNF268Q14587 947 aaPredicted RBP21.37■■□□□ 1.01
CLN3-230ENST00000568076 DRICH1Q6PGQ1 229 aaPredicted RBP21.37■■□□□ 1.01
CLN3-230ENST00000568076 POLNQ7Z5Q5 900 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 ZMAT2Q96NC0 199 aaKnown RBP21.37■■□□□ 1.01
CLN3-230ENST00000568076 WDR35Q9P2L0 1181 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 NDUFAB1O14561 156 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 HMGCRP04035 888 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 IFI35P80217 286 aaPredicted RBP21.37■■□□□ 1.01
CLN3-230ENST00000568076 SMTNL2Q2TAL5 461 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 IZUMO3Q5VZ72 239 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 NT5DC4Q86YG4 428 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 C2orf69Q8N8R5 385 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 UBA3Q8TBC4 463 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 KAT2BQ92831 832 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 MCRS1Q96EZ8 462 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 EIF2AQ9BY44 585 aaKnown RBP21.37■■□□□ 1.01
CLN3-230ENST00000568076 SYNCQ9H7C4 482 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 ZWILCHQ9H900 591 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 SNTG2Q9NY99 539 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 CPA4Q9UI42 421 aa21.37■■□□□ 1.01
CLN3-230ENST00000568076 GNEQ9Y223 722 aaKnown RBP21.37■■□□□ 1.01
CLN3-230ENST00000568076 RRP15Q9Y3B9 282 aaKnown RBP21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms