RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 FAM84AQ96KN4 292 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 PI4K2AQ9BTU6 479 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 MTMR12Q9C0I1 747 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 EPC1Q9H2F5 836 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 DDX43Q9NXZ2 648 aaKnown RBP17.29■□□□□ 0.36
CLN3-229ENST00000567963 SIX4Q9UIU6 781 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 PRPF40AO75400 957 aaKnown RBP17.28■□□□□ 0.36
CLN3-229ENST00000567963 CTHP32929 405 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 CCR3P51677 355 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 NLRP12P59046 1061 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 PLCB2Q00722 1185 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 BFSP1Q12934 665 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 GAS6Q14393 721 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 TXNDC11Q6PKC3 985 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 STXBP4Q6ZWJ1 553 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 CELF5Q8N6W0 485 aaKnown RBP17.28■□□□□ 0.36
CLN3-229ENST00000567963 TTC8Q8TAM2 541 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 HPS3Q969F9 1004 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 RMDN1Q96DB5 314 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 ZNF396Q96N95 335 aaPredicted RBP17.28■□□□□ 0.36
CLN3-229ENST00000567963 TRIM9Q9C026 710 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 SMG9Q9H0W8 520 aaKnown RBP17.28■□□□□ 0.36
CLN3-229ENST00000567963 CUEDC2Q9H467 287 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 SNX9Q9Y5X1 595 aa17.28■□□□□ 0.36
CLN3-229ENST00000567963 GABRDO14764 452 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 TMEM191BP0C7N4 346 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 CSH1P0DML2 217 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 CSH2P0DML3 217 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 ACAT1P24752 427 aaKnown RBP17.27■□□□□ 0.36
CLN3-229ENST00000567963 HOXD13P35453 343 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 CXCL12P48061 93 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 LHX1P48742 406 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 GPR15P49685 360 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 AMPD3Q01432 767 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 MYL7Q01449 175 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 TNK2Q07912 1038 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 LRRC32Q14392 662 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 WDR44Q5JSH3 913 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 INTS6LQ5JSJ4 861 aaKnown RBP17.27■□□□□ 0.36
CLN3-229ENST00000567963 SPEM1Q8N4L4 309 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 TOP6BLQ8N6T0 577 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 MAB21L3Q8N8X9 362 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 SPATA18Q8TC71 538 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 ANKRD36BP1Q96IX9 119 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 PKMYT1Q99640 499 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 ABCB6Q9NP58 842 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 RBM12Q9NTZ6 932 aaKnown RBP17.27■□□□□ 0.36
CLN3-229ENST00000567963 INTS13Q9NVM9 706 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 THG1LQ9NWX6 298 aaKnown RBP17.27■□□□□ 0.36
CLN3-229ENST00000567963 NCDNQ9UBB6 729 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 GTF3C4Q9UKN8 822 aa17.27■□□□□ 0.36
CLN3-229ENST00000567963 KIF26AQ9ULI4 1882 aaPredicted RBP17.26■□□□□ 0.35
CLN3-229ENST00000567963 ZNF233A6NK53 670 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 SOBPA7XYQ1 873 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 YEATS4O95619 227 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 CYP2F1P24903 491 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 DDX6P26196 483 aaKnown RBP eCLIP17.26■□□□□ 0.35
CLN3-229ENST00000567963 AVPR1AP37288 418 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 SATB1Q01826 763 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 SURF1Q15526 300 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 DDR2Q16832 855 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 SOWAHAQ2M3V2 549 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 SDHAF4Q5VUM1 108 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 LMBRD2Q68DH5 695 aaPredicted RBP17.26■□□□□ 0.35
CLN3-229ENST00000567963 SHC4Q6S5L8 630 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 DPH6Q7L8W6 267 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 OSTM1Q86WC4 334 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 CBWD2Q8IUF1 395 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 IQUBQ8NA54 791 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 STKLD1Q8NE28 680 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 OR5B17Q8NGF7 314 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 DHX58Q96C10 678 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 MAGED2Q9UNF1 606 aaPredicted RBP17.26■□□□□ 0.35
CLN3-229ENST00000567963 SMG5Q9UPR3 1016 aaKnown RBP17.26■□□□□ 0.35
CLN3-229ENST00000567963 PTPRJQ12913 1337 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 OBSL1O75147 1896 aa17.26■□□□□ 0.35
CLN3-229ENST00000567963 EIF3DO15371 548 aaKnown RBP eCLIP17.25■□□□□ 0.35
CLN3-229ENST00000567963 CUTAO60888 179 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 RPL10AP62906 217 aaKnown RBP17.25■□□□□ 0.35
CLN3-229ENST00000567963 MYO1EQ12965 1108 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 PON2Q15165 354 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 DGKKQ5KSL6 1271 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 TXNDC8Q6A555 127 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 CNNM4Q6P4Q7 775 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 EPM2AIP1Q7L775 607 aaPredicted RBP17.25■□□□□ 0.35
CLN3-229ENST00000567963 ADGRF2Q8IZF7 708 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 ZNF507Q8TCN5 953 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 USP13Q92995 863 aaPredicted RBP17.25■□□□□ 0.35
CLN3-229ENST00000567963 SNX21Q969T3 373 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 FAM83CQ9BQN1 747 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 GKN1Q9NS71 199 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 TDP1Q9NUW8 608 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 HSPBP1Q9NZL4 362 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 CCL26Q9Y258 94 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 R3HCC1Q9Y3T6 440 aaKnown RBP17.25■□□□□ 0.35
CLN3-229ENST00000567963 GPR179Q6PRD1 2367 aa17.25■□□□□ 0.35
CLN3-229ENST00000567963 ZNF638Q14966 1978 aaKnown RBP17.25■□□□□ 0.35
CLN3-229ENST00000567963 HCRTO43612 131 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 PCSK1P29120 753 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 ASIC1P78348 528 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms