RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 IL21Q9HBE4 155 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 DDX43Q9NXZ2 648 aaKnown RBP16.02■□□□□ 0.16
CLN3-222ENST00000566083 NCDNQ9UBB6 729 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 RAB23Q9ULC3 237 aa16.02■□□□□ 0.16
CLN3-222ENST00000566083 A0A087X0B3 334 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 PRPF6O94906 941 aaKnown RBP16.02■□□□□ 0.15
CLN3-222ENST00000566083 CHRNB1P11230 501 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 BFSP1Q12934 665 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 MAPRE1Q15691 268 aaKnown RBP16.02■□□□□ 0.15
CLN3-222ENST00000566083 DUOXA2Q1HG44 320 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 INTS6LQ5JSJ4 861 aaKnown RBP16.02■□□□□ 0.15
CLN3-222ENST00000566083 ATL3Q6DD88 541 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 NOC3LQ8WTT2 800 aaKnown RBP16.02■□□□□ 0.15
CLN3-222ENST00000566083 SNX21Q969T3 373 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 RSPRY1Q96DX4 576 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 CEP295NLQ96MC4 621 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 TRIM9Q9C026 710 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 IKZF4Q9H2S9 585 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 PDE11AQ9HCR9 933 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 SNX9Q9Y5X1 595 aa16.02■□□□□ 0.15
CLN3-222ENST00000566083 TICRRQ7Z2Z1 1910 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 TSC2P49815 1807 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 GOLGA8IPA6NC78 632 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 GOLGA8JA6NMD2 632 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 SPECC1L-ADORA2AF8WAN1 911 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 PAPSS2O95340 614 aaPredicted RBP16.01■□□□□ 0.15
CLN3-222ENST00000566083 HSP90AA1P07900 732 aaKnown RBP16.01■□□□□ 0.15
CLN3-222ENST00000566083 CTHP32929 405 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 CNR2P34972 360 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 NLRP12P59046 1061 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 ITPRIPL2Q3MIP1 535 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 CFAP221Q4G0U5 840 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 C4orf50Q6ZRC1 276 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 KIAA2013Q8IYS2 634 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 GIPC2Q8TF65 315 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 SLC46A2Q9BY10 475 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 PCIF1Q9H4Z3 704 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 INTS13Q9NVM9 706 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 CGNQ9P2M7 1197 aaKnown RBP16.01■□□□□ 0.15
CLN3-222ENST00000566083 L1RE1Q9UN81 338 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 UBE4BO95155 1302 aa16.01■□□□□ 0.15
CLN3-222ENST00000566083 CACNA1AO00555 2505 aa16■□□□□ 0.15
CLN3-222ENST00000566083 DMDP11532 3685 aa16■□□□□ 0.15
CLN3-222ENST00000566083 NUP210Q8TEM1 1887 aaPredicted RBP16■□□□□ 0.15
CLN3-222ENST00000566083 SLC38A8A6NNN8 435 aa16■□□□□ 0.15
CLN3-222ENST00000566083 GABRDO14764 452 aa16■□□□□ 0.15
CLN3-222ENST00000566083 F11P03951 625 aa16■□□□□ 0.15
CLN3-222ENST00000566083 FAM163BP0C2L3 166 aa16■□□□□ 0.15
CLN3-222ENST00000566083 HMGA1P17096 107 aaKnown RBP16■□□□□ 0.15
CLN3-222ENST00000566083 ASIC1P78348 528 aa16■□□□□ 0.15
CLN3-222ENST00000566083 CYP4F8P98187 520 aa16■□□□□ 0.15
CLN3-222ENST00000566083 PUM1Q14671 1186 aaKnown RBP eCLIP16■□□□□ 0.15
CLN3-222ENST00000566083 E2F4Q16254 413 aa16■□□□□ 0.15
CLN3-222ENST00000566083 CC2D1AQ6P1N0 951 aaPredicted RBP16■□□□□ 0.15
CLN3-222ENST00000566083 SPATA2LQ8IUW3 424 aaPredicted RBP16■□□□□ 0.15
CLN3-222ENST00000566083 WDR49Q8IV35 697 aa16■□□□□ 0.15
CLN3-222ENST00000566083 ADGRF2Q8IZF7 708 aa16■□□□□ 0.15
CLN3-222ENST00000566083 FSIP1Q8NA03 581 aa16■□□□□ 0.15
CLN3-222ENST00000566083 CXorf38Q8TB03 319 aa16■□□□□ 0.15
CLN3-222ENST00000566083 TRMT2BQ96GJ1 504 aaKnown RBP16■□□□□ 0.15
CLN3-222ENST00000566083 MYRFLQ96LU7 910 aa16■□□□□ 0.15
CLN3-222ENST00000566083 PI4K2AQ9BTU6 479 aa16■□□□□ 0.15
CLN3-222ENST00000566083 MTMR12Q9C0I1 747 aa16■□□□□ 0.15
CLN3-222ENST00000566083 FOXD4L1Q9NU39 408 aa16■□□□□ 0.15
CLN3-222ENST00000566083 TDP1Q9NUW8 608 aa16■□□□□ 0.15
CLN3-222ENST00000566083 EHD2Q9NZN4 543 aa16■□□□□ 0.15
CLN3-222ENST00000566083 GMEB2Q9UKD1 530 aa16■□□□□ 0.15
CLN3-222ENST00000566083 SMG5Q9UPR3 1016 aaKnown RBP16■□□□□ 0.15
CLN3-222ENST00000566083 COL4A3Q01955 1670 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 PRAMEF12O95522 483 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 HOXA6P31267 233 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 PDE6CP51160 858 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 ZNF268Q14587 947 aaPredicted RBP15.99■□□□□ 0.15
CLN3-222ENST00000566083 FAM26FQ5R3K3 315 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 HS2ST1Q7LGA3 356 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 MON1AQ86VX9 555 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 ZNF507Q8TCN5 953 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 DHX58Q96C10 678 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 HPDLQ96IR7 371 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 FNBP1Q96RU3 617 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 C7orf25Q9BPX7 421 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 FAM13BQ9NYF5 915 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 GTSE1Q9NYZ3 720 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 HSPBP1Q9NZL4 362 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 TFIP11Q9UBB9 837 aaKnown RBP15.99■□□□□ 0.15
CLN3-222ENST00000566083 NCANO14594 1321 aa15.99■□□□□ 0.15
CLN3-222ENST00000566083 COL4A2P08572 1712 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 NOL4O94818 638 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 TDGF1P13385 188 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 MAGEA11P43364 429 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 WNT7BP56706 349 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 SOWAHAQ2M3V2 549 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 TSSK4Q6SA08 328 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 VSTM1Q6UX27 236 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 HSCBQ8IWL3 235 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 MAB21L3Q8N8X9 362 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 ZSWIM2Q8NEG5 633 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 LRRC3BQ96PB8 259 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 FAM83CQ9BQN1 747 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 GKN1Q9NS71 199 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms