RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 NOC3LQ8WTT2 800 aaKnown RBP15.97■□□□□ 0.15
CLN3-213ENST00000565047 DEPDC1BQ8WUY9 529 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 SPATA32Q96LK8 384 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 CGRRF1Q99675 332 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 ABCB6Q9NP58 842 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 ABI2Q9NYB9 513 aaPredicted RBP15.97■□□□□ 0.15
CLN3-213ENST00000565047 USP25Q9UHP3 1055 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 GTF3C4Q9UKN8 822 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 PCDHB5Q9Y5E4 795 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.96■□□□□ 0.15
CLN3-213ENST00000565047 FAM170BA6NMN3 283 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 FGF19O95750 216 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 STAU1O95793 577 aaKnown RBP15.96■□□□□ 0.15
CLN3-213ENST00000565047 TNNC2P02585 160 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 MYL1P05976 194 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 CYP2F1P24903 491 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 LHX1P48742 406 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 CYP2J2P51589 502 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 PSMD2Q13200 908 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 NFE2Q16621 373 aaPredicted RBP15.96■□□□□ 0.15
CLN3-213ENST00000565047 CFAP221Q4G0U5 840 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 TPRG1Q6ZUI0 275 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 ASCL5Q7RTU5 278 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 SLC9A9Q8IVB4 645 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 ADGRF2Q8IZF7 708 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 PI4K2AQ9BTU6 479 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 SLC46A2Q9BY10 475 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 XYLT2Q9H1B5 865 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 ATXN3LQ9H3M9 355 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 GOLPH3LQ9H4A5 285 aa15.96■□□□□ 0.15
CLN3-213ENST00000565047 A0A1W2PQ27 194 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 A0A1W2PQ64 194 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 A0A1W2PQD8 194 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 ATP2C2O75185 946 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 TADA3O75528 432 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 PRAMEF12O95522 483 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 FAM163BP0C2L3 166 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 PRR29P0C7W0 189 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 WARSP23381 471 aaKnown RBP15.95■□□□□ 0.14
CLN3-213ENST00000565047 GDI1P31150 447 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 MLLT6P55198 1093 aaPredicted RBP15.95■□□□□ 0.14
CLN3-213ENST00000565047 MYL7Q01449 175 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 TSPY1Q01534 308 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 MYO1EQ12965 1108 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 HS2ST1Q7LGA3 356 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 FRMD5Q7Z6J6 570 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 GPIHBP1Q8IV16 184 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 C1orf210Q8IVY1 113 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 IRF7Q92985 503 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 E2F7Q96AV8 911 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 CCDC127Q96BQ5 260 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 MYRFLQ96LU7 910 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 TASP1Q9H6P5 420 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 BRD9Q9H8M2 597 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 CRTAC1Q9NQ79 661 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 OBP2AQ9NY56 170 aa15.95■□□□□ 0.14
CLN3-213ENST00000565047 ZFHX2Q9C0A1 2572 aaPredicted RBP15.95■□□□□ 0.14
CLN3-213ENST00000565047 CHADO15335 359 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 PRPF40AO75400 957 aaKnown RBP15.94■□□□□ 0.14
CLN3-213ENST00000565047 TACC1O75410 805 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 NOL4O94818 638 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 C4BPAP04003 597 aaKnown RBP15.94■□□□□ 0.14
CLN3-213ENST00000565047 DLATP10515 647 aaKnown RBP15.94■□□□□ 0.14
CLN3-213ENST00000565047 CDC25CP30307 473 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 SYKP43405 635 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 CASP4P49662 377 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 NLRP12P59046 1061 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 CYP4F8P98187 520 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 DPYDQ12882 1025 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 DDR2Q16832 855 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 GPR158Q5T848 1215 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 SDHAF4Q5VUM1 108 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 ZNF852Q6ZMS4 543 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 STKLD1Q8NE28 680 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 PARD3BQ8TEW8 1205 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 FUBP3Q96I24 572 aaKnown RBP eCLIP15.94■□□□□ 0.14
CLN3-213ENST00000565047 NELL2Q99435 816 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 VRTNQ9H8Y1 702 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 CDH9Q9ULB4 789 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 CFAP54Q96N23 3096 aa15.94■□□□□ 0.14
CLN3-213ENST00000565047 NUP210Q8TEM1 1887 aaPredicted RBP15.93■□□□□ 0.14
CLN3-213ENST00000565047 PRR23AA6NEV1 266 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 SOBPA7XYQ1 873 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 TULP1O00294 542 aaPredicted RBP15.93■□□□□ 0.14
CLN3-213ENST00000565047 PDXKO00764 312 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 ZNF263O14978 683 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 GFRA3O60609 400 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 RHOBTB3O94955 611 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 RPN1P04843 607 aaKnown RBP15.93■□□□□ 0.14
CLN3-213ENST00000565047 TNNI1P19237 187 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 PCSK1P29120 753 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 MAGEA11P43364 429 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 RPS9P46781 194 aaKnown RBP15.93■□□□□ 0.14
CLN3-213ENST00000565047 MCCD1P59942 119 aaPredicted RBP15.93■□□□□ 0.14
CLN3-213ENST00000565047 UBXN2BQ14CS0 331 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 VEPH1Q14D04 833 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 WDR44Q5JSH3 913 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 TDRD10Q5VZ19 366 aaKnown RBP15.93■□□□□ 0.14
CLN3-213ENST00000565047 RIN3Q8TB24 985 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 GOLGA5Q8TBA6 731 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms