RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 DPEP3Q9H4B8 488 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 CDY1Q9Y6F8 540 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 PTPRDP23468 1912 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.94■■□□□ 1.1
CLN3-212ENST00000564574 EPOPA6NHQ4 379 aa21.94■■□□□ 1.1
CLN3-212ENST00000564574 GNA15P30679 374 aa21.94■■□□□ 1.1
CLN3-212ENST00000564574 HNRNPH3P31942 346 aaKnown RBP21.94■■□□□ 1.1
CLN3-212ENST00000564574 CA8P35219 290 aa21.94■■□□□ 1.1
CLN3-212ENST00000564574 PDE6CP51160 858 aa21.94■■□□□ 1.1
CLN3-212ENST00000564574 NFE2Q16621 373 aaPredicted RBP21.94■■□□□ 1.1
CLN3-212ENST00000564574 SGO2Q562F6 1265 aa21.94■■□□□ 1.1
CLN3-212ENST00000564574 MRPL43Q8N983 215 aaKnown RBP21.94■■□□□ 1.1
CLN3-212ENST00000564574 MYCBPAPQ8TBZ2 947 aa21.94■■□□□ 1.1
CLN3-212ENST00000564574 MICAL1Q8TDZ2 1067 aa21.94■■□□□ 1.1
CLN3-212ENST00000564574 AUTS2Q8WXX7 1259 aa21.94■■□□□ 1.1
CLN3-212ENST00000564574 PKMYT1Q99640 499 aa21.94■■□□□ 1.1
CLN3-212ENST00000564574 CRTAC1Q9NQ79 661 aa21.94■■□□□ 1.1
CLN3-212ENST00000564574 ABHD10Q9NUJ1 306 aa21.94■■□□□ 1.1
CLN3-212ENST00000564574 C2orf71A6NGG8 1288 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 MED7O43513 233 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 CPB1P15086 417 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 CD19P15391 556 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 OR1D2P34982 312 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 PRKCIP41743 596 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 GSDMDP57764 484 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 PSMC1P62191 440 aaKnown RBP21.93■■□□□ 1.1
CLN3-212ENST00000564574 GPR17Q13304 367 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 ORC1Q13415 861 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 ARHGAP17Q68EM7 881 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 C4orf50Q6ZRC1 276 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 ZNF677Q86XU0 584 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 TC2NQ8N9U0 490 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 C2orf15Q8WU43 125 aaKnown RBP21.93■■□□□ 1.1
CLN3-212ENST00000564574 KLHL5Q96PQ7 755 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 TMEM209Q96SK2 561 aa21.93■■□□□ 1.1
CLN3-212ENST00000564574 ZNHIT6Q9NWK9 470 aaKnown RBP21.93■■□□□ 1.1
CLN3-212ENST00000564574 BZW2Q9Y6E2 419 aaKnown RBP21.93■■□□□ 1.1
CLN3-212ENST00000564574 LAMA3Q16787 3333 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 ATP8B3O60423 1300 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 MYBPHLA2RUH7 354 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 TEX28O15482 410 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 ATP2C2O75185 946 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 C1RP00736 705 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 ADH1AP07327 375 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 CYP11B1P15538 503 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 RPL17P18621 184 aaKnown RBP21.92■■□□□ 1.1
CLN3-212ENST00000564574 IRS1P35568 1242 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 ADKP55263 362 aaKnown RBP21.92■■□□□ 1.1
CLN3-212ENST00000564574 ROR1Q01973 937 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 RAB33AQ14088 237 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 SLC39A12Q504Y0 691 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 MDH1BQ5I0G3 518 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 ZNF697Q5TEC3 545 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 TPGS2Q68CL5 300 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 RSPO2Q6UXX9 243 aaPredicted RBP21.92■■□□□ 1.1
CLN3-212ENST00000564574 IRF2BP2Q7Z5L9 587 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 SLC47A2Q86VL8 602 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 MRPL38Q96DV4 380 aaKnown RBP21.92■■□□□ 1.1
CLN3-212ENST00000564574 PDLIM2Q96JY6 352 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 LMCD1Q9NZU5 365 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 GTF3C4Q9UKN8 822 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 MAFFQ9ULX9 164 aa21.92■■□□□ 1.1
CLN3-212ENST00000564574 MYH10P35580 1976 aa21.91■■□□□ 1.1
CLN3-212ENST00000564574 MTCL1Q9Y4B5 1905 aaKnown RBP21.91■■□□□ 1.1
CLN3-212ENST00000564574 THAP12O43422 761 aa21.91■■□□□ 1.1
CLN3-212ENST00000564574 CNPP09543 421 aaKnown RBP21.91■■□□□ 1.1
CLN3-212ENST00000564574 ARID5AQ03989 594 aa21.91■■□□□ 1.1
CLN3-212ENST00000564574 MEA1Q16626 185 aa21.91■■□□□ 1.1
CLN3-212ENST00000564574 GPR153Q6NV75 609 aa21.91■■□□□ 1.1
CLN3-212ENST00000564574 LRRTM3Q86VH5 581 aa21.91■■□□□ 1.1
CLN3-212ENST00000564574 SPPL2BQ8TCT7 592 aa21.91■■□□□ 1.1
CLN3-212ENST00000564574 EPS8L1Q8TE68 723 aa21.91■■□□□ 1.1
CLN3-212ENST00000564574 MYLPFQ96A32 169 aa21.91■■□□□ 1.1
CLN3-212ENST00000564574 CYFIP2Q96F07 1278 aa21.91■■□□□ 1.1
CLN3-212ENST00000564574 FUBP3Q96I24 572 aaKnown RBP eCLIP21.91■■□□□ 1.1
CLN3-212ENST00000564574 PANX2Q96RD6 677 aa21.91■■□□□ 1.1
CLN3-212ENST00000564574 HNRNPABQ99729 332 aaKnown RBP21.91■■□□□ 1.1
CLN3-212ENST00000564574 TTYH1Q9H313 450 aaPredicted RBP21.91■■□□□ 1.1
CLN3-212ENST00000564574 PLXNA3P51805 1871 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 WDR27A2RRH5 827 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 HIDE1A8MVS5 230 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 ABLIM3O94929 683 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 SERPING1P05155 500 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 OR4Q2P0C623 313 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 ARPP19P56211 112 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 KLHL30Q0D2K2 578 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 CNGA2Q16280 664 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 E4F1Q66K89 784 aaPredicted RBP21.9■■□□□ 1.1
CLN3-212ENST00000564574 SPATA2LQ8IUW3 424 aaPredicted RBP21.9■■□□□ 1.1
CLN3-212ENST00000564574 C12orf29Q8N999 325 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 ZNF461Q8TAF7 563 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 ZNF606Q8WXB4 792 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 PPP2R3CQ969Q6 453 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 PCED1BQ96HM7 432 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 ABCB6Q9NP58 842 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 FAM49BQ9NUQ9 324 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 TMLHEQ9NVH6 421 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 HSFX1Q9UBD0 423 aa21.9■■□□□ 1.1
CLN3-212ENST00000564574 AFF4Q9UHB7 1163 aaKnown RBP21.9■■□□□ 1.1
CLN3-212ENST00000564574 PCDHB5Q9Y5E4 795 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms