RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CCDC173Q0VFZ6 552 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 MEA1Q16626 185 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 MDH1BQ5I0G3 518 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 LRRTM3Q86VH5 581 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 C12orf29Q8N999 325 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 GDPD5Q8WTR4 605 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 SLC20A1Q8WUM9 679 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 TNIP3Q96KP6 325 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 PANX2Q96RD6 677 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 SYT11Q9BT88 431 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 TLR9Q9NR96 1032 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 FAM49BQ9NUQ9 324 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 TMLHEQ9NVH6 421 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 PUF60Q9UHX1 559 aaKnown RBP17.65■□□□□ 0.42
VPS4A-202ENST00000562754 MYO7AQ13402 2215 aa17.64■□□□□ 0.42
VPS4A-202ENST00000562754 MYBPHLA2RUH7 354 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 PLEKP08567 350 aaPredicted RBP17.64■□□□□ 0.41
VPS4A-202ENST00000562754 CCDC130P13994 396 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 CHRNB2P17787 502 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 IRS1P35568 1242 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 PDE6CP51160 858 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 CDR1P51861 262 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 TSPY1Q01534 308 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 PTK2Q05397 1052 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 PLPP4Q5VZY2 271 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 FAM171BQ6P995 826 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 FMNL3Q8IVF7 1028 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 GPR65Q8IYL9 337 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 DDX1Q92499 740 aaKnown RBP17.64■□□□□ 0.41
VPS4A-202ENST00000562754 HEXIM2Q96MH2 286 aaKnown RBP17.64■□□□□ 0.41
VPS4A-202ENST00000562754 TCF25Q9BQ70 676 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 CLSTN3Q9BQT9 956 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 ENTPD7Q9NQZ7 604 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 MRPL17Q9NRX2 175 aaKnown RBP17.64■□□□□ 0.41
VPS4A-202ENST00000562754 ARHGAP20Q9P2F6 1191 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 CDY1Q9Y6F8 540 aa17.64■□□□□ 0.41
VPS4A-202ENST00000562754 PLXNA3P51805 1871 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 O00370 1275 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 SOX1O00570 391 aaPredicted RBP17.63■□□□□ 0.41
VPS4A-202ENST00000562754 THAP12O43422 761 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 SERPING1P05155 500 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 CFHP08603 1231 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 VDRP11473 427 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 SSTR3P32745 418 aaPredicted RBP17.63■□□□□ 0.41
VPS4A-202ENST00000562754 BPIFB4P59827 614 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 KLHL30Q0D2K2 578 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 SGO2Q562F6 1265 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 TAF3Q5VWG9 929 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 ARHGAP17Q68EM7 881 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 SLC8B1Q6J4K2 584 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 ZNF571Q7Z3V5 609 aaPredicted RBP17.63■□□□□ 0.41
VPS4A-202ENST00000562754 TMC7Q7Z402 723 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 TMEM139Q8IV31 216 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 MYCBPAPQ8TBZ2 947 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 MYLPFQ96A32 169 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 CHP1Q99653 195 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 B3GNT5Q9BYG0 378 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 HAUS4Q9H6D7 363 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 RXFP1Q9HBX9 757 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 GTF3C4Q9UKN8 822 aa17.63■□□□□ 0.41
VPS4A-202ENST00000562754 LAMA2P24043 3122 aaKnown RBP17.63■□□□□ 0.41
VPS4A-202ENST00000562754 MYO9BQ13459 2157 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.62■□□□□ 0.41
VPS4A-202ENST00000562754 HIDE1A8MVS5 230 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 RFXAPO00287 272 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 LPXNO60711 386 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 VNN2O95498 520 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 CCDC172P0C7W6 258 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 OR1D2P34982 312 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 ARPP19P56211 112 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 FMO1Q01740 532 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 ROR1Q01973 937 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 SMC1AQ14683 1233 aaKnown RBP17.62■□□□□ 0.41
VPS4A-202ENST00000562754 SLC39A12Q504Y0 691 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 TDRD12Q587J7 1177 aaKnown RBP17.62■□□□□ 0.41
VPS4A-202ENST00000562754 PPP1R26Q5T8A7 1209 aaPredicted RBP17.62■□□□□ 0.41
VPS4A-202ENST00000562754 PAQR9Q6ZVX9 377 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 GLYCTKQ8IVS8 523 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 FUKQ8N0W3 1084 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 ZNF606Q8WXB4 792 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 PCED1BQ96HM7 432 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 OXCT2Q9BYC2 517 aaPredicted RBP17.62■□□□□ 0.41
VPS4A-202ENST00000562754 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.62■□□□□ 0.41
VPS4A-202ENST00000562754 FNIP2Q9P278 1114 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 KIAA1257Q9ULG3 409 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.62■□□□□ 0.41
VPS4A-202ENST00000562754 IRAK3Q9Y616 596 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 CHD7Q9P2D1 2997 aa17.62■□□□□ 0.41
VPS4A-202ENST00000562754 WDR27A2RRH5 827 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 C2orf71A6NGG8 1288 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 CLDN5O00501 218 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 TEX28O15482 410 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 CXCL14O95715 111 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 MMEP08473 750 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 CNPP09543 421 aaKnown RBP17.61■□□□□ 0.41
VPS4A-202ENST00000562754 CPB1P15086 417 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 ADORA2BP29275 332 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 CA8P35219 290 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 CDK17Q00537 523 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 CDR2Q01850 454 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms