RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	RIC1	Q4ADV7	1423 aa		2.85	□□□□□ -1.95
SPG11-223	ENST00000560858	TNS3	Q68CZ2	1445 aa		2.85	□□□□□ -1.95
SPG11-223	ENST00000560858	BCL9L	Q86UU0	1499 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	MYH8	P13535	1937 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	SMTNL1	A8MU46	457 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	MGST3	O14880	152 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	CTAGE5	O15320	804 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	NEMF	O60524	1076 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	PFKFB2	O60825	505 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	PRPF6	O94906	941 aa	Known RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	ANXA1	P04083	346 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	ATP5J	P18859	108 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	EIF2S2	P20042	333 aa	Known RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	CD69	Q07108	199 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	DMTN	Q08495	405 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	NCBP1	Q09161	790 aa	Known RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	CHAF1A	Q13111	956 aa	Predicted RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	OS9	Q13438	667 aa	Predicted RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	FHL1	Q13642	323 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	RAB33A	Q14088	237 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	MYBPC3	Q14896	1274 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	IQCB1	Q15051	598 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	EPHA7	Q15375	998 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	STX1A	Q16623	288 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	LONRF2	Q1L5Z9	754 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	MTERF2	Q49AM1	385 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	ANO6	Q4KMQ2	910 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	C1orf141	Q5JVX7	400 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	ATL3	Q6DD88	541 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	NAA16	Q6N069	864 aa	Predicted RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	ZSCAN25	Q6NSZ9	544 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	KANSL1	Q7Z3B3	1105 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	LUZP1	Q86V48	1076 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	PHYKPL	Q8IUZ5	450 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	C17orf53	Q8N3J3	647 aa	Predicted RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	FBXL16	Q8N461	479 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	C7orf31	Q8N865	590 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	NECAB1	Q8N987	351 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	NSUN7	Q8NE18	718 aa	Known RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	PPP1R14C	Q8TAE6	165 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	ACTRT2	Q8TDY3	377 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	TFAP2C	Q92754	450 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	LRRC59	Q96AG4	307 aa	Known RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	MRRF	Q96E11	262 aa	Known RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	MRFAP1L1	Q96HT8	127 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	PGBD1	Q96JS3	809 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	SOX7	Q9BT81	388 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	FSD1	Q9BTV5	496 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	TRIM55	Q9BYV6	548 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	TNMD	Q9H2S6	317 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	GPR108	Q9NPR9	543 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	ASB6	Q9NWX5	421 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	DACT1	Q9NYF0	836 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	C9orf78	Q9NZ63	289 aa	Predicted RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	DBNL	Q9UJU6	430 aa	Known RBP	2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	ZNF831	Q5JPB2	1677 aa		2.84	□□□□□ -1.95
SPG11-223	ENST00000560858	MAP3K15	Q6ZN16	1313 aa		2.84	□□□□□ -1.96
SPG11-223	ENST00000560858	COL5A3	P25940	1745 aa	Predicted RBP	2.84	□□□□□ -1.96
SPG11-223	ENST00000560858	CPD	O75976	1380 aa		2.84	□□□□□ -1.96
SPG11-223	ENST00000560858	NID2	Q14112	1375 aa		2.84	□□□□□ -1.96
SPG11-223	ENST00000560858	PTPDC1	A2A3K4	754 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858		H7C1D1	291 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	JAK2	O60674	1132 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	CTDNEP1	O95476	244 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	CYP21A2	P08686	494 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	HMGB1	P09429	215 aa	Known RBP	2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	XPA	P23025	273 aa	Predicted RBP	2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	TKT	P29401	623 aa	Known RBP	2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	KCNJ4	P48050	445 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	EVC	P57679	992 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	RBM6	P78332	1123 aa	Known RBP	2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	CCZ1B	P86790	482 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	CCZ1	P86791	482 aa	Predicted RBP	2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	EXOSC10	Q01780	885 aa	Known RBP	2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	SCAP	Q12770	1279 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	G3BP1	Q13283	466 aa	Known RBP eCLIP	2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	GCKR	Q14397	625 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	ATP2B3	Q16720	1220 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	CCDC144B	Q3MJ40	725 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	ZC3H12B	Q5HYM0	836 aa	Known RBP	2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	DNTTIP2	Q5QJE6	756 aa	Known RBP	2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	KIAA1841	Q6NSI8	718 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	FAM173B	Q6P4H8	233 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	ZNF790	Q6PG37	636 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	BTNL9	Q6UXG8	535 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	ZNF517	Q6ZMY9	492 aa	Predicted RBP	2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	C11orf57	Q6ZUT1	292 aa	Predicted RBP	2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	STOX1	Q6ZVD7	989 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	TAS1R1	Q7RTX1	841 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	MCF2L2	Q86YR7	1114 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	TMEM132C	Q8N3T6	1108 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	PDCL2	Q8N4E4	241 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	KBTBD3	Q8NAB2	608 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	PIK3C3	Q8NEB9	887 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	GSTCD	Q8NEC7	633 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	ENGASE	Q8NFI3	743 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	ZFP28	Q8NHY6	868 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	HASPIN	Q8TF76	798 aa		2.83	□□□□□ -1.96
SPG11-223	ENST00000560858	DDB2	Q92466	427 aa		2.83	□□□□□ -1.96

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