RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CDK5RAP2Q96SN8 1893 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ATP8B3O60423 1300 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 GOLGA6L10A6NI86 522 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 CHRNA1P02708 482 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 USP17L7P0C7H9 530 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 SKIP12755 728 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 LMO2P25791 158 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 HOXD13P35453 343 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ARL1P40616 181 aaPredicted RBP5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ZNF131P52739 623 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 CKAP4Q07065 602 aaKnown RBP5.75□□□□□ -1.49
VPS13C-209ENST00000560637 DUSP4Q13115 394 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 CALCOCO2Q13137 446 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 PLD1Q13393 1074 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 KYAT1Q16773 422 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 E4F1Q66K89 784 aaPredicted RBP5.75□□□□□ -1.49
VPS13C-209ENST00000560637 LEKR1Q6ZMV7 388 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 NOP9Q86U38 636 aaKnown RBP5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ZNF280BQ86YH2 543 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 VPS52Q8N1B4 723 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 TMC2Q8TDI7 906 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ZNF558Q96NG5 402 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 B3GNT5Q9BYG0 378 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 DPEP3Q9H4B8 488 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 DNAJB4Q9UDY4 337 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ESYT3A0FGR9 886 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 GOLGA8MH3BSY2 632 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 SPTLC1O15269 473 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 SLC26A4O43511 780 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 GNRH1P01148 92 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ATP2A2P16615 1042 aaKnown RBP5.75□□□□□ -1.49
VPS13C-209ENST00000560637 SAT1P21673 171 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 RAB27AP51159 221 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 TKTL1P51854 596 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 CCZ1BP86790 482 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 CCZ1P86791 482 aaPredicted RBP5.75□□□□□ -1.49
VPS13C-209ENST00000560637 PTK7Q13308 1070 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 SLC18A3Q16572 532 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ZACNQ401N2 412 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 CFAP221Q4G0U5 840 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 TAS1R3Q7RTX0 852 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 CCDC170Q8IYT3 715 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 DCP1BQ8IZD4 617 aaKnown RBP5.75□□□□□ -1.49
VPS13C-209ENST00000560637 PLEKHO2Q8TD55 490 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 GANCQ8TET4 914 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 C1orf54Q8WWF1 131 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 CPSF3Q9UKF6 684 aaKnown RBP5.75□□□□□ -1.49
VPS13C-209ENST00000560637 KAT6AQ92794 2004 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 MYH4Q9Y623 1939 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 DDX60LQ5H9U9 1706 aaKnown RBP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 A0A1B0GUA9 196 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 E5RJQ4 531 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 M0QYT0 321 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 DNM1LO00429 736 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 TRDMT1O14717 391 aaKnown RBP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 ZRANB2O95218 330 aaKnown RBP eCLIP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 CXCL14O95715 111 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 ATP1A1P05023 1023 aaKnown RBP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 EDN1P05305 212 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 CYP2F1P24903 491 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 CDC25BP30305 580 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 ADCY8P40145 1251 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 PNPLA4P41247 253 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 MLLT3P42568 568 aaPredicted RBP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 WNT7BP56706 349 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 BASP1P80723 227 aaKnown RBP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 ADCY1Q08828 1119 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 CC2D1AQ6P1N0 951 aaPredicted RBP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 SLC39A5Q6ZMH5 540 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 SPATA20Q8TB22 786 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 UBLCP1Q8WVY7 318 aaPredicted RBP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 SLITRK1Q96PX8 696 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 PAIP2Q9BPZ3 127 aaKnown RBP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 ADAM33Q9BZ11 813 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 OSBPL7Q9BZF2 842 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 FAM107BQ9H098 131 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 ATXN3LQ9H3M9 355 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 FZD8Q9H461 694 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 PRDM10Q9NQV6 1147 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 HMGXB4Q9UGU5 601 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 PTPRJQ12913 1337 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 MDM4O15151 490 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 HOXA2O43364 376 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 TSPAN3O60637 253 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 ATG7O95352 703 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 GJA1P17302 382 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 GRM5P41594 1212 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 FPGSQ05932 587 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 TUSC3Q13454 348 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 TARBP2Q15633 366 aaKnown RBP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 C10orf76Q5T2E6 689 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 DENND1BQ6P3S1 775 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 DARS2Q6PI48 645 aaKnown RBP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 ENOSF1Q7L5Y1 443 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 NSMCE1Q8WV22 266 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 IQCDQ96DY2 449 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 ZMAT2Q96NC0 199 aaKnown RBP5.74□□□□□ -1.49
VPS13C-209ENST00000560637 AGAP3Q96P47 875 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 CORO1BQ9BR76 489 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 DDX47Q9H0S4 455 aaKnown RBP5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms