RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 OVOS1Q6IE37 1185 aa12.94□□□□□ -0.34
HERC1-205ENST00000559886 PPP1R2P3Q6NXS1 205 aa12.94□□□□□ -0.34
HERC1-205ENST00000559886 TMEM173Q86WV6 379 aaPredicted RBP12.94□□□□□ -0.34
HERC1-205ENST00000559886 WDTC1Q8N5D0 677 aa12.94□□□□□ -0.34
HERC1-205ENST00000559886 TMEM35BQ8NCS4 154 aa12.94□□□□□ -0.34
HERC1-205ENST00000559886 CPA5Q8WXQ8 436 aa12.94□□□□□ -0.34
HERC1-205ENST00000559886 YME1L1Q96TA2 773 aa12.94□□□□□ -0.34
HERC1-205ENST00000559886 CDH9Q9ULB4 789 aa12.94□□□□□ -0.34
HERC1-205ENST00000559886 SF3B1O75533 1304 aaKnown RBP eCLIP12.93□□□□□ -0.348e-8■■■■■ 92.2
HERC1-205ENST00000559886 NT5C1B-RDH14C9J2C7 533 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 ATP2C2O75185 946 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 TMEM253P0C7T8 217 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 ACAT1P24752 427 aaKnown RBP12.93□□□□□ -0.34
HERC1-205ENST00000559886 KIAA0319Q5VV43 1072 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 DENND1BQ6P3S1 775 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 LPIN3Q9BQK8 851 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 SYT15Q9BQS2 421 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 ACBD6Q9BR61 282 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 GPR62Q9BZJ7 368 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 FAM49BQ9NUQ9 324 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 TSPAN16Q9UKR8 245 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 GUCA1BQ9UMX6 200 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 CEP83Q9Y592 693 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 BTNL10A8MVZ5 291 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 OAZ2O95190 189 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 EFEMP2O95967 443 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 TKTP29401 623 aaKnown RBP12.93□□□□□ -0.34
HERC1-205ENST00000559886 NSFP46459 744 aaKnown RBP12.93□□□□□ -0.34
HERC1-205ENST00000559886 PSMC1P62191 440 aaKnown RBP12.93□□□□□ -0.34
HERC1-205ENST00000559886 YWHAHQ04917 246 aaPredicted RBP12.93□□□□□ -0.34
HERC1-205ENST00000559886 ELAVL2Q12926 359 aaKnown RBP12.93□□□□□ -0.34
HERC1-205ENST00000559886 FUT10Q6P4F1 479 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 KCNT2Q6UVM3 1135 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 PHF13Q86YI8 300 aaPredicted RBP12.93□□□□□ -0.34
HERC1-205ENST00000559886 THEM5Q8N1Q8 247 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 PHOSPHO2Q8TCD6 241 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 BCL7CQ8WUZ0 217 aaPredicted RBP12.93□□□□□ -0.34
HERC1-205ENST00000559886 CTNNBL1Q8WYA6 563 aaPredicted RBP12.93□□□□□ -0.34
HERC1-205ENST00000559886 SLC9A7Q96T83 725 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 MRPL42Q9Y6G3 142 aaKnown RBP12.93□□□□□ -0.34
HERC1-205ENST00000559886 SLC4A7Q9Y6M7 1214 aa12.93□□□□□ -0.34
HERC1-205ENST00000559886 PTPRDP23468 1912 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 CARNS1A5YM72 827 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 ABCB4P21439 1286 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 FGFR3P22607 806 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 PTPN14Q15678 1187 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 PKDCCQ504Y2 493 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 FAM171A1Q5VUB5 890 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 C1orf131Q8NDD1 294 aaKnown RBP12.92□□□□□ -0.34
HERC1-205ENST00000559886 VCPIP1Q96JH7 1222 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 C16orf45Q96MC5 204 aaPredicted RBP12.92□□□□□ -0.34
HERC1-205ENST00000559886 THAP2Q9H0W7 228 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 CRTAC1Q9NQ79 661 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 SALL4Q9UJQ4 1053 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 NLRC5Q86WI3 1866 aa12.92□□□□□ -0.34
HERC1-205ENST00000559886 A0A0A6YYK5 440 aaPredicted RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 FAM170AA1A519 330 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 M0QYV0 167 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 CCDC130P13994 396 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 LAG3P18627 525 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 MMP8P22894 467 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 GPD2P43304 727 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 GPC5P78333 572 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 GOLGA7BQ2TAP0 167 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 SPOUT1Q5T280 376 aaKnown RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 RASIP1Q5U651 963 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 MON1BQ7L1V2 547 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 HERC6Q8IVU3 1022 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 MCOLN2Q8IZK6 566 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 IGSF21Q96ID5 467 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 ZNF558Q96NG5 402 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 HNRNPABQ99729 332 aaKnown RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 IRX2Q9BZI1 471 aaPredicted RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 MTIF3Q9H2K0 278 aaKnown RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 INSL6Q9Y581 213 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 NR2E3Q9Y5X4 410 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 LAMA2P24043 3122 aaKnown RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 C1QBPQ07021 282 aaKnown RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 PTP4A2Q12974 167 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 MRPL58Q14197 206 aaKnown RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 CCDC142Q17RM4 750 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 INTS6LQ5JSJ4 861 aaKnown RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 VARS2Q5ST30 1063 aaKnown RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 FAM171BQ6P995 826 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 TTC30AQ86WT1 665 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 FUKQ8N0W3 1084 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 RNF10Q8N5U6 811 aaKnown RBP12.91□□□□□ -0.34
HERC1-205ENST00000559886 ANKRD52Q8NB46 1076 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 OR10T2Q8NGX3 314 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 UBA3Q8TBC4 463 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 MYCBPAPQ8TBZ2 947 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 SLC2A14Q8TDB8 520 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 PKMYT1Q99640 499 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 ZBED2Q9BTP6 218 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 HESX1Q9UBX0 185 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 CYTH4Q9UIA0 394 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 GTF3C4Q9UKN8 822 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 NCANO14594 1321 aa12.91□□□□□ -0.34
HERC1-205ENST00000559886 CEP290O15078 2479 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms