RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 ANK1P16157 1881 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 ZSCAN5CA6NGD5 496 aaPredicted RBP18.85■□□□□ 0.61
SNX1-208ENST00000559844 NPTXRO95502 500 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 KRT19P08727 400 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 RGS19P49795 217 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 DHX34Q14147 1143 aaKnown RBP18.85■□□□□ 0.61
SNX1-208ENST00000559844 TERF2Q15554 542 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 UBXN11Q5T124 520 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 SCARA3Q6AZY7 606 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 NT5DC4Q86YG4 428 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 PASD1Q8IV76 773 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 CD302Q8IX05 232 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 TMEM192Q8IY95 271 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 RUNDC3BQ96NL0 473 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 TRIM6Q9C030 488 aaPredicted RBP18.85■□□□□ 0.61
SNX1-208ENST00000559844 RAB17Q9H0T7 212 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 AMACRQ9UHK6 382 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 MTUS1Q9ULD2 1270 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 PCDHGC3Q9UN70 934 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 UTP11Q9Y3A2 253 aaKnown RBP18.85■□□□□ 0.61
SNX1-208ENST00000559844 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.85■□□□□ 0.61
SNX1-208ENST00000559844 TNRC18O15417 2968 aaPredicted RBP18.85■□□□□ 0.61
SNX1-208ENST00000559844 TRIP11Q15643 1979 aa18.85■□□□□ 0.61
SNX1-208ENST00000559844 ESYT3A0FGR9 886 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 GOLGA6BA6NDN3 693 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 FAM187AA6NFU0 413 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 CALB1P05937 261 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 CFHP08603 1231 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 NFICP08651 508 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 MARCKSL1P49006 195 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 IKBKEQ14164 716 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 DCAF4L1Q3SXM0 396 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 ALS2CLQ60I27 953 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 JADE1Q6IE81 842 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 PLEKHA7Q6IQ23 1121 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 RTN4RL1Q86UN2 441 aaPredicted RBP18.84■□□□□ 0.61
SNX1-208ENST00000559844 MREGQ8N565 214 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 TMEM35BQ8NCS4 154 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 LINC01599Q8WXQ3 324 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 ACAP3Q96P50 834 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 CEP83Q9Y592 693 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 TTC3P53804 2025 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 MED7O43513 233 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 PHF2O75151 1096 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 PROSCO94903 275 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 P4HA1P13674 534 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 IBSPP21815 317 aaPredicted RBP18.84■□□□□ 0.61
SNX1-208ENST00000559844 CHRNA3P32297 505 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 C1orf127Q8N9H9 656 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.84■□□□□ 0.61
SNX1-208ENST00000559844 BCO2Q9BYV7 579 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 TSPYL2Q9H2G4 693 aaPredicted RBP18.84■□□□□ 0.61
SNX1-208ENST00000559844 VRTNQ9H8Y1 702 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 FAM114A2Q9NRY5 505 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 RGS18Q9NS28 235 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 FAM105AQ9NUU6 356 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 PARVAQ9NVD7 372 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 SIX4Q9UIU6 781 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 C2CD2Q9Y426 696 aa18.84■□□□□ 0.61
SNX1-208ENST00000559844 HSF2BPO75031 334 aa18.83■□□□□ 0.61
SNX1-208ENST00000559844 WEE2P0C1S8 567 aa18.83■□□□□ 0.61
SNX1-208ENST00000559844 CDH5P33151 784 aaPredicted RBP18.83■□□□□ 0.61
SNX1-208ENST00000559844 PTP4A2Q12974 167 aa18.83■□□□□ 0.61
SNX1-208ENST00000559844 TMEM132DQ14C87 1099 aa18.83■□□□□ 0.61
SNX1-208ENST00000559844 SCARA5Q6ZMJ2 495 aa18.83■□□□□ 0.61
SNX1-208ENST00000559844 MMS22LQ6ZRQ5 1243 aa18.83■□□□□ 0.61
SNX1-208ENST00000559844 C16orf59Q7L2K0 433 aa18.83■□□□□ 0.61
SNX1-208ENST00000559844 SEC14L1Q92503 715 aa18.83■□□□□ 0.61
SNX1-208ENST00000559844 PLEKHA4Q9H4M7 779 aa18.83■□□□□ 0.61
SNX1-208ENST00000559844 NXF1Q9UBU9 619 aaKnown RBP18.83■□□□□ 0.61
SNX1-208ENST00000559844 RASAL2Q9UJF2 1139 aa18.83■□□□□ 0.61
SNX1-208ENST00000559844 ITGB3P05106 788 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 PAEPP09466 180 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 PYGMP11217 842 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 MMP8P22894 467 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 BRD2P25440 801 aaKnown RBP18.82■□□□□ 0.6
SNX1-208ENST00000559844 GRM5P41594 1212 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 DR1Q01658 176 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 MAMLD1Q13495 774 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 HLTFQ14527 1009 aaKnown RBP eCLIP18.82■□□□□ 0.6
SNX1-208ENST00000559844 SLC10A6Q3KNW5 377 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 ZNF365Q70YC5 407 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 SLC24A5Q71RS6 500 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 OTOP2Q7RTS6 562 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 SLC13A5Q86YT5 568 aaPredicted RBP18.82■□□□□ 0.6
SNX1-208ENST00000559844 MAIP1Q8WWC4 291 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 TRAIPQ9BWF2 469 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 FAM124BQ9H5Z6 455 aaPredicted RBP18.82■□□□□ 0.6
SNX1-208ENST00000559844 CYP3A43Q9HB55 503 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 ITGA11Q9UKX5 1188 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 HES2Q9Y543 173 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 ENPP3O14638 875 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 TTI1O43156 1089 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 MAN1A1P33908 653 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 FAM43BQ6ZT52 329 aaPredicted RBP18.82■□□□□ 0.6
SNX1-208ENST00000559844 FEZF2Q8TBJ5 459 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 NXF3Q9H4D5 531 aaKnown RBP18.82■□□□□ 0.6
SNX1-208ENST00000559844 POLIQ9UNA4 740 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 NR2E1Q9Y466 385 aa18.82■□□□□ 0.6
SNX1-208ENST00000559844 IPPQ9Y573 584 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms