RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 EIF4BP23588 611 aaKnown RBP11.22□□□□□ -0.61
CUX1-217ENST00000558836 ACVR2BQ13705 512 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 TMEM132DQ14C87 1099 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 PTGISQ16647 500 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 CAPN12Q6ZSI9 719 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 KIF12Q96FN5 646 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 SNF8Q96H20 258 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 PIWIL1Q96J94 861 aaKnown RBP11.22□□□□□ -0.61
CUX1-217ENST00000558836 C9orf72Q96LT7 481 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 OSMRQ99650 979 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 EIF2AQ9BY44 585 aaKnown RBP11.22□□□□□ -0.61
CUX1-217ENST00000558836 VTA1Q9NP79 307 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 SNTG2Q9NY99 539 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 PARP2Q9UGN5 583 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 ANAPC5Q9UJX4 755 aa11.22□□□□□ -0.61
CUX1-217ENST00000558836 SCN1AP35498 2009 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 MAGEB2O15479 319 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 RGS16O15492 202 aaPredicted RBP11.21□□□□□ -0.61
CUX1-217ENST00000558836 MICAL2O94851 1124 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 CELF2O95319 508 aaKnown RBP11.21□□□□□ -0.61
CUX1-217ENST00000558836 NPTXRO95502 500 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 MMP3P08254 477 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 RARGP13631 454 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 RGS7P49802 495 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 NDST1P52848 882 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 NRLP54845 237 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 PTPN11Q06124 597 aaPredicted RBP11.21□□□□□ -0.61
CUX1-217ENST00000558836 P3H1Q32P28 736 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 PPP1R15BQ5SWA1 713 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 FAM43BQ6ZT52 329 aaPredicted RBP11.21□□□□□ -0.61
CUX1-217ENST00000558836 LINC01465Q8N7H1 131 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 ZMAT2Q96NC0 199 aaKnown RBP11.21□□□□□ -0.61
CUX1-217ENST00000558836 ACAP3Q96P50 834 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 CCT8L2Q96SF2 557 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 TINF2Q9BSI4 451 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 TMEM121Q9BTD3 319 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 DPP3Q9NY33 737 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 TBK1Q9UHD2 729 aa11.21□□□□□ -0.61
CUX1-217ENST00000558836 MYO1CO00159 1063 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 TULP2O00295 520 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 IL18RAPO95256 599 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 LSM8O95777 96 aaKnown RBP11.21□□□□□ -0.62
CUX1-217ENST00000558836 NUDT17P0C025 328 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 CREB1P16220 341 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 AKAP5P24588 427 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 GTF2A2P52657 109 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 ZNF200P98182 395 aaPredicted RBP11.21□□□□□ -0.62
CUX1-217ENST00000558836 CDO1Q16878 200 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 C3orf20Q8ND61 904 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 TMEM176AQ96HP8 235 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 ADAM33Q9BZ11 813 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 EPN3Q9H201 632 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 PCDHGC3Q9UN70 934 aa11.21□□□□□ -0.62
CUX1-217ENST00000558836 IQCA1LA6NCM1 817 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 GOLGA8MH3BSY2 632 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 EBAG9O00559 213 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 CILPO75339 1184 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 LRCH4O75427 683 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 MCF2P10911 925 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 PTK6Q13882 451 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 CCNG2Q16589 344 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 IZUMO3Q5VZ72 239 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 SPOCD1Q6ZMY3 1216 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 NLRP14Q86W24 1093 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 C18orf25Q96B23 403 aaPredicted RBP11.2□□□□□ -0.62
CUX1-217ENST00000558836 BCO2Q9BYV7 579 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 MLXIPLQ9NP71 852 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 FAM49BQ9NUQ9 324 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 KLK14Q9P0G3 267 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 A0A1B0GUA9 196 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 RASGRF2O14827 1237 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 ITIH2P19823 946 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 CYP3A5P20815 502 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 EIF3BP55884 814 aaKnown RBP11.2□□□□□ -0.62
CUX1-217ENST00000558836 YWHAEP62258 255 aaKnown RBP11.2□□□□□ -0.62
CUX1-217ENST00000558836 BYSLQ13895 437 aaKnown RBP11.2□□□□□ -0.62
CUX1-217ENST00000558836 HIC1Q14526 733 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 SLMAPQ14BN4 828 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 DUSP28Q4G0W2 176 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 SYCP2LQ5T4T6 812 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 AGBL2Q5U5Z8 902 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 CYP4F22Q6NT55 531 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 RHBDF2Q6PJF5 856 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 PNMA8AQ86V59 439 aaPredicted RBP11.2□□□□□ -0.62
CUX1-217ENST00000558836 RCOR2Q8IZ40 523 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 HSPH1Q92598 858 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 GBA2Q9HCG7 927 aaPredicted RBP11.2□□□□□ -0.62
CUX1-217ENST00000558836 WHRNQ9P202 907 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 SNX9Q9Y5X1 595 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 PLXNB2O15031 1838 aa11.2□□□□□ -0.62
CUX1-217ENST00000558836 LIASO43766 372 aa11.19□□□□□ -0.62
CUX1-217ENST00000558836 STRNO43815 780 aa11.19□□□□□ -0.62
CUX1-217ENST00000558836 DGKDQ16760 1214 aa11.19□□□□□ -0.62
CUX1-217ENST00000558836 QPCTQ16769 361 aa11.19□□□□□ -0.62
CUX1-217ENST00000558836 FAM102AQ5T9C2 384 aaPredicted RBP11.19□□□□□ -0.62
CUX1-217ENST00000558836 HOOK3Q86VS8 718 aa11.19□□□□□ -0.62
CUX1-217ENST00000558836 SESTD1Q86VW0 696 aa11.19□□□□□ -0.62
CUX1-217ENST00000558836 XYLT1Q86Y38 959 aa11.19□□□□□ -0.62
CUX1-217ENST00000558836 MYCBPAPQ8TBZ2 947 aa11.19□□□□□ -0.62
CUX1-217ENST00000558836 ZNF473Q8WTR7 871 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms