RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 LRRC71Q8N4P6 559 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 CNTD1Q8N815 330 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 WASF1Q92558 559 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 VRK1Q99986 396 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-205ENST00000558088 TMEM79Q9BSE2 394 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 TINAGL1Q9GZM7 467 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-205ENST00000558088 GPR35Q9HC97 309 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 CCNL1Q9UK58 526 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-205ENST00000558088 LIMCH1Q9UPQ0 1083 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 POLHQ9Y253 713 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-205ENST00000558088 CYP2D7A0A087X1C5 515 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 SMIM35A0A1B0GVV1 85 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 TLDC2A0PJX2 215 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 ZNF213O14771 459 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 KIF20AO95235 890 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 PDHA1P08559 390 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 VIL1P09327 827 aaKnown RBP3.54□□□□□ -1.84
VPS13C-205ENST00000558088 IARSP41252 1262 aaKnown RBP3.54□□□□□ -1.84
VPS13C-205ENST00000558088 NR4A2P43354 598 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 RAPGEF1Q13905 1077 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 TREML2Q5T2D2 321 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 THEMIS2Q5TEJ8 643 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 VPS53Q5VIR6 699 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 RUSC1-AS1Q66K80 236 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 TMEM108Q6UXF1 575 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 NAPRTQ6XQN6 538 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 TRIM72Q6ZMU5 477 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 MRPL10Q7Z7H8 261 aaKnown RBP3.54□□□□□ -1.84
VPS13C-205ENST00000558088 DTX2Q86UW9 622 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 KRT73Q86Y46 540 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 FAM109AQ8N4B1 249 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 NANOGP1Q8N7R0 232 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 C1orf162Q8NEQ5 155 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-205ENST00000558088 NSUN6Q8TEA1 469 aaKnown RBP3.54□□□□□ -1.84
VPS13C-205ENST00000558088 DAZAP1Q96EP5 407 aaKnown RBP3.54□□□□□ -1.84
VPS13C-205ENST00000558088 C5orf34Q96MH7 638 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 ADGRE3Q9BY15 652 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 SLC5A4Q9NY91 659 aa3.54□□□□□ -1.84
VPS13C-205ENST00000558088 M0QYG6 137 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 SOCS2O14508 198 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 USP1O94782 785 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 MT-CO1P00395 513 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 IL6RP08887 468 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-205ENST00000558088 NHLRC4P0CG21 123 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-205ENST00000558088 ENGP17813 658 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 SCP2P22307 547 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 CLCN2P51788 898 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 SATB1Q01826 763 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 SNAPC2Q13487 334 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 KIF22Q14807 665 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 FAM160B1Q5W0V3 765 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 SDE2Q6IQ49 451 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 NECAB2Q7Z6G3 386 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 CPA6Q8N4T0 437 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 C3orf20Q8ND61 904 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 RP9Q8TA86 221 aaKnown RBP3.53□□□□□ -1.84
VPS13C-205ENST00000558088 PIGOQ8TEQ8 1089 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 TNPO1Q92973 898 aaKnown RBP3.53□□□□□ -1.84
VPS13C-205ENST00000558088 COA7Q96BR5 231 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 SPRTNQ9H040 489 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-205ENST00000558088 EBF3Q9H4W6 596 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 WDCPQ9H6R7 721 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 GLOD4Q9HC38 313 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 DUSP22Q9NRW4 184 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 TRNAU1APQ9NX07 287 aaKnown RBP3.53□□□□□ -1.84
VPS13C-205ENST00000558088 DLL3Q9NYJ7 618 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 WWOXQ9NZC7 414 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 FEZ2Q9UHY8 353 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-205ENST00000558088 ZDHHC8Q9ULC8 765 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 ADAMTS5Q9UNA0 930 aa3.53□□□□□ -1.84
VPS13C-205ENST00000558088 WDR17Q8IZU2 1322 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 NT5C1B-RDH14C9J2C7 533 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 UBE2Q2LH0YL09 131 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 DTNBO60941 627 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 MYBL2P10244 700 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 EDNRBP24530 442 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 PHKA1P46020 1223 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 TPTEP56180 551 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 CYP4F2P78329 520 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 TCF15Q12870 199 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 LRRC41Q15345 812 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 TBC1D25Q3MII6 688 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 EFCAB2Q5VUJ9 269 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 PARS2Q7L3T8 475 aaKnown RBP3.52□□□□□ -1.85
VPS13C-205ENST00000558088 MAVSQ7Z434 540 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 USP37Q86T82 979 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 PNMA8AQ86V59 439 aaPredicted RBP3.52□□□□□ -1.85
VPS13C-205ENST00000558088 CHSY1Q86X52 802 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 SAMD14Q8IZD0 417 aaPredicted RBP3.52□□□□□ -1.85
VPS13C-205ENST00000558088 C8orf58Q8NAV2 365 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 CYP2W1Q8TAV3 490 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 CUL5Q93034 780 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 FAXDC2Q96IV6 333 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 FAM118BQ9BPY3 351 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 SERHLQ9NQF3 203 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 ZNF580Q9UK33 172 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 PRKAB1Q9Y478 270 aa3.52□□□□□ -1.85
VPS13C-205ENST00000558088 PHLDB1Q86UU1 1377 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 H7C1Q1 480 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms