RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 MYO1EQ12965 1108 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 PPP1R15BQ5SWA1 713 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 DPH6Q7L8W6 267 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 DENND1AQ8TEH3 1009 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 CFAP57Q96MR6 1250 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 MYLK2Q9H1R3 596 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 RXFP1Q9HBX9 757 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 KLHL14Q9P2G3 628 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 NUMBLQ9Y6R0 609 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 CLUHO75153 1309 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 C3orf70A6NLC5 250 aaPredicted RBP13.57□□□□□ -0.24
LDLR-207ENST00000558013 CST8O60676 142 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 KRT19P08727 400 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 TARBP2Q15633 366 aaKnown RBP13.57□□□□□ -0.24
LDLR-207ENST00000558013 SH3PXD2AQ5TCZ1 1133 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 RELL1Q8IUW5 271 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 BRSK2Q8IWQ3 736 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 RBM41Q96IZ5 413 aaKnown RBP13.57□□□□□ -0.24
LDLR-207ENST00000558013 PHTF1Q9UMS5 762 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 LRCH4O75427 683 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 LDHAP00338 332 aaKnown RBP13.57□□□□□ -0.24
LDLR-207ENST00000558013 KRT4P19013 534 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 TARSP26639 723 aaKnown RBP13.57□□□□□ -0.24
LDLR-207ENST00000558013 CDC25CP30307 473 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 CTCFP49711 727 aaPredicted RBP13.57□□□□□ -0.24
LDLR-207ENST00000558013 IL9RQ01113 521 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 ZNF268Q14587 947 aaPredicted RBP13.57□□□□□ -0.24
LDLR-207ENST00000558013 HSDL1Q3SXM5 330 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 BBOF1Q8ND07 529 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 TRPM4Q8TD43 1214 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 UTP4Q969X6 686 aaKnown RBP13.57□□□□□ -0.24
LDLR-207ENST00000558013 ERP27Q96DN0 273 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 BTBD7Q9P203 1132 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 AGTPBP1Q9UPW5 1226 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 ARIH2O95376 493 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 PSMA2P25787 234 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 ASPAP45381 313 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 EEF1DP3Q658K8 133 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 UNC45BQ8IWX7 931 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 TMEM35BQ8NCS4 154 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 N4BP2L2Q92802 583 aaPredicted RBP13.56□□□□□ -0.24
LDLR-207ENST00000558013 TWNKQ96RR1 684 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 CPXM1Q96SM3 734 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 NIFKQ9BYG3 293 aaKnown RBP13.56□□□□□ -0.24
LDLR-207ENST00000558013 NIF3L1Q9GZT8 377 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 XYLT2Q9H1B5 865 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 ETNK1Q9HBU6 452 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 CHKBQ9Y259 395 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 MAP3K6O95382 1288 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 LAMTOR4Q0VGL1 99 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 TRPC3Q13507 836 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 ASRGL1Q7L266 308 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 RHPN2Q8IUC4 686 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 CPT1BQ92523 772 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 AS3MTQ9HBK9 375 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 PARP14Q460N5 1801 aa13.56□□□□□ -0.24
LDLR-207ENST00000558013 SOWAHBA6NEL2 793 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 ALOX15BO15296 676 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 TOM1L1O75674 476 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 PGK2P07205 417 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 HOXC6P09630 235 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 CETN2P41208 172 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 OVGP1Q12889 678 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 MMRN1Q13201 1228 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 CCDC142Q17RM4 750 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 ZNF699Q32M78 642 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 ZNF772Q68DY9 489 aaPredicted RBP13.55□□□□□ -0.24
LDLR-207ENST00000558013 NPNTQ6UXI9 565 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 PPP1R21Q6ZMI0 780 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 FAM71DQ8N9W8 422 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 SLC35B2Q8TB61 432 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 KLRG1Q96E93 195 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 NLRP4Q96MN2 994 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 ACO2Q99798 780 aaKnown RBP13.55□□□□□ -0.24
LDLR-207ENST00000558013 TACO1Q9BSH4 297 aaKnown RBP13.55□□□□□ -0.24
LDLR-207ENST00000558013 CXorf56Q9H5V9 222 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 MINDY3Q9H8M7 445 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 ARHGEF3Q9NR81 526 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 HAO1Q9UJM8 370 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 ZNF112Q9UJU3 913 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 IGKV6D-21A0A0A0MT36 114 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 ABLIM1O14639 778 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 TMEM63AO94886 807 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 ANP32DO95626 131 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 CALB1P05937 261 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 IQCF3P0C7M6 154 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 KRT3P12035 628 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 ADRA1DP25100 572 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 OAZ1P54368 228 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 SLC25A11Q02978 314 aaKnown RBP13.55□□□□□ -0.24
LDLR-207ENST00000558013 ENPEPQ07075 957 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 NEDD9Q14511 834 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 HIF1AQ16665 826 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 DUOXA2Q1HG44 320 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 PLEKHG4Q58EX7 1191 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 ZNF449Q6P9G9 518 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 IGDCC3Q8IVU1 814 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 HSPH1Q92598 858 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 SDCBP2Q9H190 292 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 AVILO75366 819 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms