RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 TMEM196Q5HYL7 178 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 RRAGBQ5VZM2 374 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 TXNDC8Q6A555 127 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 SV2BQ7L1I2 683 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 MON1AQ86VX9 555 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 BRSK2Q8IWQ3 736 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 PDCL2Q8N4E4 241 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 C1orf127Q8N9H9 656 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 CLIC6Q96NY7 704 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 ACBD6Q9BR61 282 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 PI4K2AQ9BTU6 479 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 UPF2Q9HAU5 1272 aaKnown RBP17.17■□□□□ 0.34
SCFD1-224ENST00000557713 TDP1Q9NUW8 608 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 TBC1D7Q9P0N9 293 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 KIF26AQ9ULI4 1882 aaPredicted RBP17.17■□□□□ 0.34
SCFD1-224ENST00000557713 L1RE1Q9UN81 338 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 AGAP1Q9UPQ3 857 aa17.17■□□□□ 0.34
SCFD1-224ENST00000557713 TRDMT1O14717 391 aaKnown RBP17.16■□□□□ 0.34
SCFD1-224ENST00000557713 SLC30A4O14863 429 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 EXTL3O43909 919 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 PRPF40AO75400 957 aaKnown RBP17.16■□□□□ 0.34
SCFD1-224ENST00000557713 LDHAP00338 332 aaKnown RBP17.16■□□□□ 0.34
SCFD1-224ENST00000557713 ITGB3P05106 788 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 CSH1P0DML2 217 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 CSH2P0DML3 217 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 GARTP22102 1010 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 POLR2BP30876 1174 aaKnown RBP17.16■□□□□ 0.34
SCFD1-224ENST00000557713 CASP5P51878 434 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 TFAMQ00059 246 aaKnown RBP17.16■□□□□ 0.34
SCFD1-224ENST00000557713 FSTL4Q6MZW2 842 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 PKN3Q6P5Z2 889 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.16■□□□□ 0.34
SCFD1-224ENST00000557713 FAM160A2Q8N612 972 aaPredicted RBP17.16■□□□□ 0.34
SCFD1-224ENST00000557713 RIN3Q8TB24 985 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 NETO1Q8TDF5 533 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 CACTINQ8WUQ7 758 aaKnown RBP17.16■□□□□ 0.34
SCFD1-224ENST00000557713 LEO1Q8WVC0 666 aaPredicted RBP17.16■□□□□ 0.34
SCFD1-224ENST00000557713 SAAL1Q96ER3 474 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 PKMYT1Q99640 499 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 EBF3Q9H4W6 596 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 OLFML3Q9NRN5 406 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 PCDHB13Q9Y5F0 798 aa17.16■□□□□ 0.34
SCFD1-224ENST00000557713 TCHHQ07283 1943 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.15■□□□□ 0.34
SCFD1-224ENST00000557713 VPS37CA5D8V6 355 aaPredicted RBP17.15■□□□□ 0.34
SCFD1-224ENST00000557713 HUS1O60921 280 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 BFSP1Q12934 665 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 ZNF268Q14587 947 aaPredicted RBP17.15■□□□□ 0.34
SCFD1-224ENST00000557713 DDR2Q16832 855 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 SDHAF4Q5VUM1 108 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 TRIM68Q6AZZ1 485 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 PRR23CQ6ZRP0 262 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 TMEM86AQ8N2M4 240 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 LRRC52Q8N7C0 313 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 STKLD1Q8NE28 680 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 MRPS31Q92665 395 aaKnown RBP17.15■□□□□ 0.34
SCFD1-224ENST00000557713 MYRFLQ96LU7 910 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 CNTNAP3BQ96NU0 1288 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 CNTNAP3Q9BZ76 1288 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 KIF9Q9HAQ2 790 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 FBRSL1Q9HCM7 1045 aaKnown RBP17.15■□□□□ 0.34
SCFD1-224ENST00000557713 ABCB6Q9NP58 842 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 GDAP2Q9NXN4 497 aa17.15■□□□□ 0.34
SCFD1-224ENST00000557713 DDX43Q9NXZ2 648 aaKnown RBP17.15■□□□□ 0.34
SCFD1-224ENST00000557713 RBAKQ9NYW8 714 aaPredicted RBP17.15■□□□□ 0.34
SCFD1-224ENST00000557713 MAGED2Q9UNF1 606 aaPredicted RBP17.15■□□□□ 0.34
SCFD1-224ENST00000557713 DENND4CQ5VZ89 1909 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 CCDC163A0A0D9SF12 145 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 FRMD3A2A2Y4 597 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 GOLGA8IPA6NC78 632 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 GOLGA8JA6NMD2 632 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 NOL4O94818 638 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 GCNT3O95395 438 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 PDCP20941 246 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 ACAT1P24752 427 aaKnown RBP17.14■□□□□ 0.33
SCFD1-224ENST00000557713 CYP2F1P24903 491 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 RPL10AP62906 217 aaKnown RBP17.14■□□□□ 0.33
SCFD1-224ENST00000557713 MYL7Q01449 175 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 GRSF1Q12849 480 aaKnown RBP eCLIP17.14■□□□□ 0.33
SCFD1-224ENST00000557713 RESTQ13127 1097 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 INTS6LQ5JSJ4 861 aaKnown RBP17.14■□□□□ 0.33
SCFD1-224ENST00000557713 FAM173BQ6P4H8 233 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 CEP68Q76N32 757 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 OSTM1Q86WC4 334 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 CSGALNACT2Q8N6G5 542 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 TRMT2BQ96GJ1 504 aaKnown RBP17.14■□□□□ 0.33
SCFD1-224ENST00000557713 FAM84AQ96KN4 292 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 FGFBP2Q9BYJ0 223 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 GTF3C4Q9UKN8 822 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 ITGA11Q9UKX5 1188 aa17.14■□□□□ 0.33
SCFD1-224ENST00000557713 GABRDO14764 452 aa17.13■□□□□ 0.33
SCFD1-224ENST00000557713 GDF9O60383 454 aa17.13■□□□□ 0.33
SCFD1-224ENST00000557713 FOXD2O60548 495 aaPredicted RBP17.13■□□□□ 0.33
SCFD1-224ENST00000557713 ATG13O75143 517 aa17.13■□□□□ 0.33
SCFD1-224ENST00000557713 TADA3O75528 432 aa17.13■□□□□ 0.33
SCFD1-224ENST00000557713 ARSAP15289 507 aa17.13■□□□□ 0.33
SCFD1-224ENST00000557713 TXLNAP40222 546 aa17.13■□□□□ 0.33
SCFD1-224ENST00000557713 GALK1P51570 392 aa17.13■□□□□ 0.33
SCFD1-224ENST00000557713 RBP5P82980 135 aa17.13■□□□□ 0.33
SCFD1-224ENST00000557713 ALCAMQ13740 583 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms